Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1195 140 8e-28 seq100 131 4e-25 seq1502 105 2e-17 seq1291 102 2e-16 seq2251 87.8 4e-12 >seq1195 Length=66079 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || ||||||||||||||||| | |||||| |||| | || Sbjct 11692 ACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGT 11633 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || || || || |||||||| || || ||||| ||||| || || ||||| Sbjct 11632 TCGTCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACC 11573 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| ||||| || || || || |||||||| || |||| || ||||| || Sbjct 11572 CTCCTTATCTTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAA 11513 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || ||||| || | || |||| ||| | |||||| Sbjct 11512 GGTGATGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 11471 Score = 114 bits (126), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| ||||| ||||||||||||| || ||||| | | ||| | |||||| Sbjct 12138 AGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCT 12079 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| |||||||| || | ||||| || || || || ||||| || || ||| Sbjct 12078 TCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCT 12019 Query 225622 TGGATCTTTTGCTTCACAGCT--TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679 || | ||||| || | || || ||||| || || | ||| || || | || |||| Sbjct 12018 TGAA--TTTTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCG 11961 Query 225680 TCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||| || || | ||||||| || | |||||| Sbjct 11960 TCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 11927 Score = 107 bits (118), Expect = 5e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || || || || |||||||| | |||||| || | | || Sbjct 11920 ACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGT 11861 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || || || || || ||||| || || ||||| || || || |||||||| Sbjct 11860 TCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACC 11801 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||| |||||| || || |||||||| || || | || || || || Sbjct 11800 TTCTTTGTCTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAA 11741 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || | |||||| | || | |||||| Sbjct 11740 AGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 11699 >seq100 Length=143921 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || |||||||||||||||||||| | || || || | ||| || | |||||| Sbjct 59135 AGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCT 59194 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| || || ||||||||||| | |||||||| || || || |||||||| || ||| Sbjct 59195 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCTTTATCT 59254 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||| || || || ||||| || |||| || || || | ||||| || Sbjct 59255 TGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTGTT 59314 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||| ||||| | ||| | |||||| Sbjct 59315 TTACCGGTCAGCGTTTTAACGAAAATTTGCAT 59346 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || || |||||||| ||||||||||| | ||| ||||| | ||||| Sbjct 58442 CGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGATAAAGTA 58501 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| | || || ||||||||||| | ||||| || || || ||||||||| Sbjct 58502 CGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCT 58561 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| ||||| |||||| || || || ||||| || |||| || || || | Sbjct 58562 TCCTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGG 58621 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || | || || | ||| | |||||| Sbjct 58622 GTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 58662 Score = 122 bits (134), Expect = 2e-22 Identities = 108/134 (81%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || |||||||| ||||||||||| | ||| ||||| | |||||| | ||||||| Sbjct 59363 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCT 59422 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | || || ||||||||||| | |||||||| || || ||||| |||||||| ||| Sbjct 59423 TCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCT 59482 Query 225622 TGGATCTTTTGCTT 225635 || ||| ||||||| Sbjct 59483 TGAATC-TTTGCTT 59495 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || |||||||| ||||||||||| | ||| ||||| | ||| || | |||||| Sbjct 58907 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCT 58966 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| || || ||||||||||| | |||||||| || || || |||||||| || ||| Sbjct 58967 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCT 59026 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || || || ||||| || |||| || || || | || || || Sbjct 59027 TGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTT 59086 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || || | ||| | |||||| Sbjct 59087 TTACCGGTGAGGGTCTTGACGAAAATTTGCAT 59118 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || |||||||| ||||| ||||| | ||| || || | ||||| | |||||| Sbjct 58679 AGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCT 58738 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | || || || |||||||| | |||||||| || || || ||||||||||| ||| Sbjct 58739 TCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCT 58798 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||| || || || ||||| || |||| || || || | || || || Sbjct 58799 TGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTT 58858 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| || | ||| | |||||| Sbjct 58859 TTACCGGTGAGAGTCTTGACGAAAATTTGCAT 58890 >seq1502 Length=20690 Score = 105 bits (116), Expect = 2e-17 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| ||||| || |||||||||| ||| || |||| |||||| | |||||| Sbjct 12754 AGAACAAGGTGAAGAGTTGACTCTTTTTGGATATTATAGTCGGACAAAGTACGTCCATCT 12695 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || ||||| || ||||||||||| | ||||| || || || ||||||||| Sbjct 12694 TCCAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCT 12644 >seq1291 Length=36373 Score = 102 bits (112), Expect = 2e-16 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT--TCTCCCATCTTCTAGCTGCTTCC 225574 || ||||||||||| | ||||||||||| ||||| | |||||||||| ||| || | Sbjct 19806 GTTGATTCTTTTTGAATATTGTAATCGG--AAAGTGAACGTCCATCTTCTAACTGTTTAC 19863 Query 225575 CAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCT 225634 |||| || || | |||||||| || || || || ||||| || ||||| || |||| | Sbjct 19864 CAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGAATTTTTTCTT 19923 Query 225635 TCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAG 225694 | || |||||||| || |||| || ||||| || || || || || || | | Sbjct 19924 TGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTACCAGTAAGTG 19983 Query 225695 TTTTTATGAACACTTGCATTTT 225716 |||| | || | |||||| || Sbjct 19984 TTTTAACAAAAATTTGCATGTT 20005 >seq2251 Length=10798 Score = 87.8 bits (96), Expect = 4e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 225523 TCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAG 225582 ||||| |||| ||| ||||| ||| || | | ||||||||| || | ||||| || Sbjct 7710 TCTTTCTGGATATTATAATCACTCAAGGTACGCTCATCTTCTAATTGACTTCCAGCAAAA 7769 Query 225583 ATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCAC-AGC 225641 |||| ||||| || || ||||| |||||||||||||||||||| || || || Sbjct 7770 ATAAAACGTTGACTATCAGGGGGAATTCCTTCCTTGTCTTGGATCTTGCATTTAACTAGG 7829 Query 225642 TTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTAT 225701 | |||||| || || | || || || || || | ||| || || || | ||||||| Sbjct 7830 CT-GATGGTATCAGACGACTCTACCTCCAAGGTTACCGTTTTTCCGGTTAGTGTTTTTAC 7888 Query 225702 GAACACTTGCAT 225713 || || ||||| Sbjct 7889 AAATACCTGCAT 7900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192374556554888