Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1373 408 6e-109 seq178 217 2e-51 seq452 102 1e-16 >seq1373 Length=28076 Score = 408 bits (452), Expect = 6e-109 Identities = 686/986 (70%), Gaps = 10/986 (1%) Strand=Plus/Minus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG-CACATCAATG 77982 |||||||||||| ||||||||||| || ||||| |||| || || || || Sbjct 3530 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACT 3471 Query 77983 ACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 78042 ||| | | ||| | | ||| | ||||||||| ||||| | | ||| || ||| || Sbjct 3470 -CCAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAAA 3412 Query 78043 ATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCA 78102 ||| ||| || | | | |||||| ||||| ||||| ||||| | ||| | ||| || | Sbjct 3411 ATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCAA 3352 Query 78103 TAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTC 78162 ||| |||| |||||| | ||||| ||| || || | | || || ||||| || |||| Sbjct 3351 AAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCTC 3292 Query 78163 CCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAG 78222 | ||||| | |||||| || || ||||||||||| | ||||| |||||||| || || | Sbjct 3291 CTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCCATTTG 3232 Query 78223 ATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCC 78282 | ||||||||||||| ||||||| ||| | || ||||| ||| |||| | | Sbjct 3231 AATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACAC 3172 Query 78283 CTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCT 78342 | || || ||||| ||||||| || | ||||| |||||| ||||| ||||| |||| Sbjct 3171 CAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCCT 3112 Query 78343 CTATACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 78401 |||| ||||| |||| ||||| ||||||||| || || | |||| | | || Sbjct 3111 CTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAGGTGTG 3053 Query 78402 CCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTAT 78461 || |||||||| || ||||||||||| || ||||| | ||||| || | |||||||| Sbjct 3052 CCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTAA 2993 Query 78462 GTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATA 78521 ||||||||||| | ||| || || | ||||| || |||||||| ||||| | |||| Sbjct 2992 GTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCATA 2933 Query 78522 TGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTT 78581 || || || | || | || | |||| || | || ||| |||| | |||| Sbjct 2932 TGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAGTT 2873 Query 78582 TTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTA 78641 ||||| |||||||| || ||| | | ||||| || ||||| || |||||| ||||| Sbjct 2872 TTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAAGTTTT 2813 Query 78642 TCTTTGTATTTGGTAACAATATCCATGACAGTAGTT---GAAATAATAGGAGATCGTACA 78698 || | || | ||||||| | ||| || ||||| || | | ||| Sbjct 2812 TCCGAATTGTTCATCACAATAT---TATAAGTTTTTTCAGAAATCATTGACGCGCGTTTC 2756 Query 78699 CCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGttttttt 78758 || |||| ||||| | ||| ||| | | |||||| | |||| ||| | |||||| Sbjct 2755 CCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTTTA 2696 Query 78759 GTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGT 78818 ||||| || || |||||||| ||||| || | ||||| || | ||||| || |||||| Sbjct 2695 GTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGATGT 2636 Query 78819 TGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGACC 78878 | || || | || || ||||||| || ||| ||||||| || | ||| | || Sbjct 2635 TTAGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTAACA 2576 Query 78879 CCATTATATAGTCCTTGAATAACTTT 78904 || | ||| | |||| ||| || || Sbjct 2575 CCTTGATAAACTCCTGAAATGACCTT 2550 Score = 176 bits (194), Expect = 6e-39 Identities = 250/350 (71%), Gaps = 4/350 (1%) Strand=Plus/Minus Query 77114 AGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATA 77173 ||| ||||| ||||||||||| |||| | || | || |||||| || || ||||| Sbjct 4559 AGGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATA 4500 Query 77174 TGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGC 77233 ||||| | | ||||||| ||||| ||||| | |||||| ||||| ||||| ||||| Sbjct 4499 AGGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGC 4440 Query 77234 CACCAATAAACTATTTCTGAGACCATGTGTTCTGAT--TTTATCTTTTAGATATTTCCAA 77291 | |||||| ||||| | ||||||| |||||| ||| | ||| | | |||||| Sbjct 4439 GAGCAATAATGAATTTCGTACACCATGT--TCTGATATTTTTTGTTTCAACAAATTCCAA 4382 Query 77292 TCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCA 77351 ||||| | ||| | ||| |||||| ||| | ||||||||||| ||| || || | | Sbjct 4381 TCCCATAAATCAGTAGGCTCAACATTCCACATATCGTATTGTAAAATGCCTTTGGAAACC 4322 Query 77352 TATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCC 77411 |||||| | ||| | ||||| || || | ||| | ||||||||| ||||| Sbjct 4321 GGTGATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCTTCT 4262 Query 77412 AATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGC 77461 ||||| || | ||| ||||| || || || | |||||| || || | ||| Sbjct 4261 AATGCACCATGATACATTGTCTCAAATATTTGCTTATTCAGTTCCTTTGC 4212 Score = 111 bits (122), Expect = 2e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 77663 AACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGC 77722 |||||||||| ||| |||||| || | ||||| || || || |||| | | | | Sbjct 3862 AACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGA 3803 Query 77723 ATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTT 77782 ||||| | ||||| ||||| | ||||||||||||||| || || ||||||||||| || Sbjct 3802 ATATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATT 3743 Query 77783 GCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGA 77842 || ||| || || || || || || ||| | || || || ||||| ||||| || Sbjct 3742 AGATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGA 3683 Query 77843 TTCGATAATAGATTTCCAGAC 77863 ||| | ||| | | ||||||| Sbjct 3682 TTCAAGAATTGCTGTCCAGAC 3662 >seq178 Length=73968 Score = 217 bits (240), Expect = 2e-51 Identities = 325/455 (71%), Gaps = 16/455 (4%) Strand=Plus/Minus Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 47896 ||||||||| ||||||||| || || ||||| || || ||||| ||||| |||| Sbjct 5530 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 5471 Query 47897 CAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATA-AAtttttttAAATC 47955 || || |||||||||||||| ||||| ||| |||||| |||||| | | | Sbjct 5470 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-C 5412 Query 47956 CTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCAT-TTCACAA 48014 | | | | | | |||||| || || ||||| |||||| ||||||| | ||| | Sbjct 5411 CAAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCG- 5353 Query 48015 TTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACA 48074 ||||| || || | |||||||||| || || || | ||| |||||||| || || || Sbjct 5352 TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACC 5293 Query 48075 GCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGA-----TACAACAA-ATGT 48128 || ||| |||| || | | ||| |||| ||| |||| | || || ||| Sbjct 5292 GCTTCCGCTATAATAGCTTCTACAGTTT------TTGTTGGAGGTCGTGCACGAAGATGA 5239 Query 48129 TTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTA 48188 | || | | |||||||||||||||||| | |||||||||| | ||||| |||||| Sbjct 5238 GTGAATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTG 5179 Query 48189 GAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT 48248 ||||| || | || ||||| | ||| | ||| || | |||||| |||| |||||||| | Sbjct 5178 GAAAAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCT 5119 Query 48249 CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||||||||| ||||| || || ||||| || Sbjct 5118 CCAGAAAAGAATATTCCTTCAACAGCGGCAAACGC 5084 Score = 152 bits (168), Expect = 7e-32 Identities = 215/300 (72%), Gaps = 4/300 (1%) Strand=Plus/Minus Query 48411 TAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAAT 48470 |||| ||| || || || |||||||| || || |||||||| || ||||||||| Sbjct 4874 TAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATGATCTGAAAT 4815 Query 48471 CCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTC 48530 || ||||||||||| ||||||| || || || || ||| ||| ||||| | ||||| Sbjct 4814 CCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCCACTAAATTT 4755 Query 48531 TCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTT 48590 ||||| || || ||||| || ||||| || || || || || |||||| ||||| Sbjct 4754 TCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTT 4695 Query 48591 TCGTTGGAAGTCAGTTTA---TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 48647 || | | |||||| | ||| ||||| ||||| || || | || ||||| ||| Sbjct 4694 TCTTCATCGTTAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCA 4635 Query 48648 GCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATAT-CACTGTATTGGAT 48706 | ||||||||||| || || || ||||| ||||| | ||| || | ||| |||| ||| Sbjct 4634 ACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGATCTACACAATATTTGAT 4575 >seq452 Length=54095 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 78348 CTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 78407 || ||||| |||| | | | ||| ||||| |||||||| | || || ||| Sbjct 32564 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 32505 Query 78408 TTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCA 78467 ||||| || || ||| |||||| ||||| |||| || || | || ||| || |||||| Sbjct 32504 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 32445 Query 78468 ATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGA 78527 ||||||| || || || | ||||||||| | | |||||||||||||| || || Sbjct 32444 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 32385 Query 78528 GGTCTTTCAAC 78538 ||||||||||| Sbjct 32384 GGTCTTTCAAC 32374 Score = 100 bits (110), Expect = 4e-16 Identities = 139/192 (72%), Gaps = 7/192 (4%) Strand=Plus/Minus Query 77121 ACTATTTGAAATTCTCCAGACAATAC---TCTACGAGTGTAAATATTACTGGTATATGGT 77177 |||| ||||||||| ||| ||||| ||| || |||||||| || || |||||| Sbjct 34268 ACTACTTGAAATTC-CCACTTAATACACGTCTTTGA---TAAATATTGCTTGTGTATGGT 34213 Query 77178 TCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACC 77237 || | ||||||||||||| | ||| ||| ||||| ||||| ||||| ||||| | | Sbjct 34212 TCAAAGCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATC 34153 Query 77238 AATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAA 77297 || ||| ||||| | |||| | ||||| || ||||| | | | ||| ||||| Sbjct 34152 AACAAAGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCAT 34093 Query 77298 AGATCTGAAGGT 77309 ||||||||||| Sbjct 34092 CGATCTGAAGGT 34081 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 78751 GtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAAT 78810 ||||||||||||||||||||| |||||| | || |||||||| || | ||||||||||| Sbjct 31998 GTTTTTTTGTTTCCTTGTGTAAATTAGAAATTGCAATTCTTGCCGCCAAAATAGCATAAT 31939 Query 78811 CAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAG 78870 ||||||| | ||| | || || |||| ||||||||| |||| | || | || Sbjct 31938 CAGGATGATTACAAGTTAGATATGCAGCAGTTTCAGCCGCTAAATTATCAAGTTCCACAG 31879 Query 78871 TTGTGACCCCATTATA 78886 | ||||| || | ||| Sbjct 31878 TGGTGACACCCTGATA 31863 Score = 93.3 bits (102), Expect = 6e-14 Identities = 197/292 (67%), Gaps = 8/292 (3%) Strand=Plus/Minus Query 77532 GGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATA 77591 |||||||||||||| || ||| ||||||||||| ||||||||||| || || Sbjct 33692 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 33633 Query 77592 ATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA- 77650 | |||||| | ||| | | ||| |||||| | | || | || || | |||||||| Sbjct 33632 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 33573 Query 77651 -TCTTCCATCT----ATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCT 77705 | ||| || | ||||||| | || | || || |||| ||||||||| ||| Sbjct 33572 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 33513 Query 77706 ACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTG 77765 || |||| | | ||||| | || || ||||||| |||| ||| | ||||| Sbjct 33512 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 33453 Query 77766 CCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAA 77817 || ||||| | ||| || |||| ||| || || || |||||| | ||| Sbjct 33452 CCAAGATTCTTTTGATTAGATTTTTCATTACAAGAATC--TATAAATATTAA 33403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694579778193280