Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1373 450 2e-121 seq178 194 2e-44 seq452 113 6e-20 >seq1373 Length=28076 Score = 450 bits (498), Expect = 2e-121 Identities = 697/985 (71%), Gaps = 8/985 (1%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA-CACATCAATG 76577 |||||||||||| ||||||||||| ||||||||| |||| |||| || || || Sbjct 3530 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACT 3471 Query 76578 ACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 76637 ||| | | ||| | | ||||| ||||||||| ||||| | | ||| || ||| || Sbjct 3470 -CCAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAAA 3412 Query 76638 ATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCA 76697 ||| ||| || | | | |||||| ||||| ||||| ||||| | ||| | || || | Sbjct 3411 ATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCAA 3352 Query 76698 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTC 76757 ||| |||| |||||| | ||||| ||| || || | | ||||| ||||| || |||| Sbjct 3351 AAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCTC 3292 Query 76758 CCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAG 76817 | ||||| | |||||| ||||| ||||||||||| | ||||| |||||||| || || | Sbjct 3291 CTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCCATTTG 3232 Query 76818 ATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGC 76877 | |||||||||||||| ||||||| ||| |||||||| ||| ||| | | Sbjct 3231 AATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACAC 3172 Query 76878 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCT 76937 | || || ||||| | ||||| || | || || |||||| || |||||||| |||| Sbjct 3171 CAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCCT 3112 Query 76938 CTATACTATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 76996 |||| |||||| |||| ||||| ||||||||| || || | |||| | | || Sbjct 3111 CTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAGGTGTG 3053 Query 76997 CCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTAT 77056 || ||||||||||| || |||||||| ||||| || | ||||| || | |||||||| Sbjct 3052 CCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTAA 2993 Query 77057 GTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATA 77116 ||||||||| | ||||| ||||| | ||||| || || || || ||||| | |||| Sbjct 2992 GTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCATA 2933 Query 77117 TGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTT 77176 || || || || || || || | |||| || | || ||| |||| | |||| Sbjct 2932 TGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAGTT 2873 Query 77177 TTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTG 77236 ||||| |||||||| || ||| | | ||||| || ||||| || ||||| ||||| Sbjct 2872 TTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAAGTTTT 2813 Query 77237 TCCTTATATTTGGTAACAATATCCATGACAGTGGT-AGAAATAATTGGAGATCGTATTCC 77295 ||| || || | ||||||| || | | | |||||| |||| | ||| | || Sbjct 2812 TCCGAATTGTTCATCACAATAT-TATAAGTTTTTTCAGAAATCATTGACGCGCGTTTCCC 2754 Query 77296 ATTTTTAGGATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGT 77355 |||| ||||| | ||| ||| | | ||||| | || | | ||| | |||||| || Sbjct 2753 TGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTTTAGT 2694 Query 77356 TTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTG 77415 ||| || || ||||| || || || || | |||||| || | |||||||| ||||||| Sbjct 2693 TTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGATGTTT 2634 Query 77416 TGTAGTGCAGGT-GGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACTC 77474 || || || | || || ||||||| || ||| |||||||||| | ||| |||| | Sbjct 2633 AGTCGT-CATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTAACAC 2575 Query 77475 CGTTATATAGCCCTTGAATAACTTT 77499 | | ||| | ||| ||| || || Sbjct 2574 CTTGATAAACTCCTGAAATGACCTT 2550 Score = 178 bits (196), Expect = 2e-39 Identities = 262/367 (71%), Gaps = 8/367 (2%) Strand=Plus/Minus Query 75709 AGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATA 75768 ||| ||||||||||||||||| |||| | || | ||| |||||| || || ||||| Sbjct 4559 AGGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATA 4500 Query 75769 TGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGC 75828 ||||| | | ||||||| ||||| ||||| | ||| || ||||| ||||| ||||| Sbjct 4499 AGGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGC 4440 Query 75829 CACCAATAAACTATTTCTGAGACCATGTGTTCTGAT--TTTATCTTTTAGATATTTCCAA 75886 | |||||| ||||| | ||||||| |||||| ||| | ||| | | |||||| Sbjct 4439 GAGCAATAATGAATTTCGTACACCATGT--TCTGATATTTTTTGTTTCAACAAATTCCAA 4382 Query 75887 TCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCA 75946 ||||| | ||| | || |||||| ||| | ||||||||||| ||| || ||| | | Sbjct 4381 TCCCATAAATCAGTAGGCTCAACATTCCACATATCGTATTGTAAAATGCCTTTGGAAACC 4322 Query 75947 TATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCT 76006 |||||| | ||| | || || | ||| |||| | |||||| || || ||| Sbjct 4321 GGTGATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCTTCT 4262 Query 76007 AACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATC--TTGCGCTTCAAGAC 76064 || ||||| | ||| ||||| || || || | |||||| || || |||||| | |||| Sbjct 4261 AATGCACCATGATACATTGTCTCAAATATTTGCTTATTCAGTTCCTTTGCGCGTAAAGA- 4203 Query 76065 TATCAAA 76071 |||||| Sbjct 4202 -ATCAAA 4197 >seq178 Length=73968 Score = 194 bits (214), Expect = 2e-44 Identities = 362/523 (69%), Gaps = 23/523 (4%) Strand=Plus/Minus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 ||||||||| |||||| || || ||| ||||| || || ||||| ||||| |||| Sbjct 5530 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 5471 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATA-AAtttttttAAATC 46444 || || |||||||||||||| ||||| |||||| |||||| | | | Sbjct 5470 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-C 5412 Query 46445 CTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCAT-TTCACAA 46503 | | | | | | |||||| || || ||||| ||||| ||||||| | ||| | Sbjct 5411 CAAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCG- 5353 Query 46504 TTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACA 46563 ||||| || || | || || |||| || || || | ||| |||||||| || || || Sbjct 5352 TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACC 5293 Query 46564 GCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGA-----TGCATCAA-ATGT 46617 || |||| ||| || | | ||| |||| ||| |||| |||| || ||| Sbjct 5292 GCTTCCGCTATAATAGCTTCTACAGTTT------TTGTTGGAGGTCGTGCACGAAGATGA 5239 Query 46618 TTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTA 46677 | || | | |||||||||||||||||| | |||||||||| | ||||| |||||| Sbjct 5238 GTGAATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTG 5179 Query 46678 GAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT 46737 ||||| || | || ||||| | ||| | || || | |||||| || | |||||||| | Sbjct 5178 GAAAAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCT 5119 Query 46738 CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTG--G 46795 |||||||||||||| ||||| ||||| || || || ||||| | || | || || | Sbjct 5118 CCAGAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG--ACGTTCAGCAAATGAAG 5061 Query 46796 CATCATTAT---GAATCCACCTTTGAGCCCAATCAGCCTTTTT 46835 || |||| |||||| | |||||||||| || ||||| Sbjct 5060 ATTCCTTATCGGAAATCCATCGAAGAGCCCAATCCGCTTTTTT 5018 Score = 167 bits (184), Expect = 3e-36 Identities = 208/282 (74%), Gaps = 10/282 (4%) Strand=Plus/Minus Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980 |||||||||||||| || ||||| || ||||||||||| ||||||||||||||||| Sbjct 4853 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 4794 Query 46981 GTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTA 47040 | ||| || || || ||| ||| ||||| ||||| ||||| || || ||||| Sbjct 4793 GGAATTTGGACTTCATTACTAAAACGTTCCACTAAATTTTCATTGACAATACCATCCGAG 4734 Query 47041 GCAGCAAAAAATGCCAATACATGTTTAATAAAATATTT---TTCATCGGTAGTCAGTTTA 47097 || ||||| || ||||| || || |||||| |||| ||||||| || |||||| Sbjct 4733 GCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTCATCGTTA---AGTTTA 4677 Query 47098 ---TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCC 47154 | ||| ||||| ||||| || || | || ||||| ||| | ||||| ||||| || Sbjct 4676 TACTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCT 4617 Query 47155 TCTGCTTTTTTATACATATTCCATATAT-CACGATATTGGAT 47195 || || ||||| ||||| | ||| || | ||| ||||| ||| Sbjct 4616 TCGGCCTTTTTGTACATTTGCCAGATCTACACAATATTTGAT 4575 >seq452 Length=54095 Score = 113 bits (124), Expect = 6e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 76943 CTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 77002 |||||||| |||| | | | ||| ||||| |||||||| | || || ||| Sbjct 32564 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 32505 Query 77003 TTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCA 77062 |||||||| || ||| ||||||||| || |||| || || | || ||| || |||||| Sbjct 32504 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 32445 Query 77063 ATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGA 77122 ||| |||| || ||||| | ||||||||| | || |||||||||||||| || || Sbjct 32444 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 32385 Query 77123 GGTCGTTCTACA 77134 |||| ||| ||| Sbjct 32384 GGTCTTTCAACA 32373 Score = 100 bits (110), Expect = 4e-16 Identities = 195/286 (68%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 76127 GGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATA 76186 |||||||||||||| || ||||||||||||||| || |||||||| ||| || Sbjct 33692 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 33633 Query 76187 ATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA- 76245 | |||||| | ||| | | ||| |||||| | | || | || || | |||||||| Sbjct 33632 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 33573 Query 76246 -TTTTCCATCTATCACAAACATATTAAG----AGCTATAGATGCTAGATTACAAACGGCT 76300 ||||| || | | |||| ||| || | || || |||| ||||||||||||| Sbjct 33572 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 33513 Query 76301 ACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTT 76360 || |||| | | ||||| | || || || |||| |||| || | ||||| Sbjct 33512 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 33453 Query 76361 CCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAA 76406 |||||||| | ||| || |||| ||||| || || |||||| Sbjct 33452 CCAAGATTCTTTTGATTAGATTTTTCATTACAAGAATC--TATAAA 33409 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/187 (72%), Gaps = 7/187 (4%) Strand=Plus/Minus Query 75721 TTGAAATTCTCCAGACAATAC---TCTTCGAGTGTAAATATTACTGGTATATGGTTCCAC 75777 ||||||||| ||| ||||| |||| || |||||||| || || |||||||| | Sbjct 34263 TTGAAATTC-CCACTTAATACACGTCTTTGA---TAAATATTGCTTGTGTATGGTTCAAA 34208 Query 75778 AGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAA 75837 ||||||||||||| | ||| ||| || || ||||| ||||| ||||| | ||| || Sbjct 34207 GCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATCAACAA 34148 Query 75838 ACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATC 75897 | ||||| | |||| | ||||| || ||||| | | | ||| ||||| |||| Sbjct 34147 AGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCATCGATC 34088 Query 75898 TGATGGT 75904 ||| ||| Sbjct 34087 TGAAGGT 34081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712843037456640