Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1502 136 9e-27 seq100 129 1e-24 seq1195 118 2e-21 seq1291 98.7 2e-15 >seq1502 Length=20690 Score = 136 bits (150), Expect = 9e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| ||||| ||||| |||||||| |||||||| | || || | ||||| Sbjct 12983 GAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATC 12924 Query 151952 TTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 ||| | ||| ||||| ||||| |||| | ||||| |||| | || ||||| || | Sbjct 12923 TTCCAATTGTTTACCGGCAAAGATCAAGCGT-TGCTGATCCGGGGGAATGCCTTCTTTGT 12865 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||| || ||| || || | | | ||||| |||||||||||||||||||| Sbjct 12864 CTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAG 12805 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || |||||||| ||||| | ||||| Sbjct 12804 TTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 12771 >seq100 Length=143921 Score = 129 bits (142), Expect = 1e-24 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| ||||| || || ||||| || || || || | |||||| | |||||| Sbjct 58679 AGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCT 58738 Query 151953 TCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || | ||| ||||||||||| |||| | || || || | | ||| |||||||| || Sbjct 58739 TCCAATTGTTTACCGGCGAAGATCAAGCGT-TGTTGATCTGGGGGGATACCTTCCTTATC 58797 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 |||||| ||| ||| || |||| | | || || ||| |||||||||||||| || Sbjct 58798 TTGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGT 58857 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || ||||||||||| ||||| | ||||| Sbjct 58858 TTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 58890 Score = 118 bits (130), Expect = 2e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| ||||| || |||||||| || || ||||| | || || | ||||| Sbjct 58906 GAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATC 58965 Query 151952 TTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 ||||| ||| || |||||||| |||| | || || || | | ||| ||||| || | Sbjct 58966 TTCTAATTGTTTACCAGCGAAGATCAAGCGT-TGTTGATCTGGAGGGATACCTTCTTTAT 59024 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||| || ||| || |||| | | || || ||| |||||||||||||| | Sbjct 59025 CTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTG 59084 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || ||||| ||||| ||||| | ||||| Sbjct 59085 TTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 59118 Score = 113 bits (124), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| ||||| || |||||||| ||||| || || | || || | ||||| Sbjct 59134 GAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATC 59193 Query 151952 TTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 ||||| ||| || |||||||| |||| | || || || | | ||| ||||| || | Sbjct 59194 TTCTAATTGTTTACCAGCGAAGATCAAGCGT-TGTTGATCTGGGGGGATACCTTCTTTAT 59252 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||| ||| ||| || |||| | | || || ||||||||||||||| || | Sbjct 59253 CTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTG 59312 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || || || || ||||| | ||||| Sbjct 59313 TTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 59346 Score = 107 bits (118), Expect = 4e-18 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| ||||| || |||||||| || || ||||| | ||||| | |||||| Sbjct 59362 GAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATC 59421 Query 151952 TTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 ||| | ||| || |||||||| |||| | || || || | | ||||||||||| | Sbjct 59422 TTCCAATTGTTTACCAGCGAAGATTAAGCGT-TGTTGATCTGGAGGAATTCCTTCCTTAT 59480 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC--TGAACTCTCTACTTCAAGAGTAAT 152068 ||||||| ||| ||| || || | | || || | ||| |||||||| ||||| Sbjct 59481 CTTGAATCTTTGCTTTAACTTGATCAATAGTATCATTGGA--CTCGACTTCAAGGGTAAT 59538 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || ||||| ||||| | ||||| Sbjct 59539 GGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 59574 >seq1195 Length=66079 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| || || ||||||||||| ||||||||||| ||||| ||||| | | || | Sbjct 11460 AGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGA 11401 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || ||||| || ||| || ||||| ||||| | |||||||| | | |||||||| Sbjct 11400 CCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCT 11341 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||||||| ||| || || | |||| ||| || |||||||| || Sbjct 11340 TTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTG 11281 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || || ||||||| ||||| Sbjct 11280 ATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 11243 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||||||||| || |||||||| || ||||| |||| | |||| ||||| Sbjct 11683 GAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATC 11624 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || ||| || ||||| || || | |||||||| | | ||| || ||||| || Sbjct 11623 CTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATC 11564 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||||||| ||| || || | | | || || |||||| || | || || || Sbjct 11563 TTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGT 11504 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||| ||||| ||||| ||||||| ||||| Sbjct 11503 TTTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 11471 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| || ||||||||||| || ||||| || | | |||| ||||| Sbjct 11910 AGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCC 11851 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| |||||||| || || | ||||| || | | || ||||| || ||| Sbjct 11850 TCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCT 11791 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||| ||| || || | | | || ||| ||| ||||| | |||||| ||| Sbjct 11790 TGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTT 11731 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || || || | ||||| Sbjct 11730 TTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 11699 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || |||||||| || |||||||||||||| ||||| | | ||| | Sbjct 12145 GAGACGGAGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACG 12086 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| | || || ||||| || | | ||||| || | | ||| || || Sbjct 12085 ACCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTC 12026 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || ||||||||||| ||| || || | | | || || || || ||||| || Sbjct 12025 TTTATCTTGAATTTTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGT 11966 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || || || || || || || | ||||| Sbjct 11965 AATCGTCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 11927 >seq1291 Length=36373 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC--CCATCTTCTAGGCTTTTCC 151965 || || |||||||| || |||||||||| ||||| | |||||||||| ||| | Sbjct 19806 GTTGATTCTTTTTGAATATTGTAATCGG--AAAGTGAACGTCCATCTTCTAACTGTTTAC 19863 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 | || || || | | || || |||| | ||||||||| || ||||||||||||| || Sbjct 19864 CAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGAATTTTTTCTT 19923 Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085 |||| | || | | | || ||| || ||||| | |||||| ||||| || || || | Sbjct 19924 TGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTACCAGTAAGTG 19983 Query 152086 TCTTCACGAAGACCTGCATTTT 152107 | || || || | ||||| || Sbjct 19984 TTTTAACAAAAATTTGCATGTT 20005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153669241311092