Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq9539 361 6e-95 seq178 183 3e-41 >seq9539 Length=558 Score = 361 bits (400), Expect = 6e-95 Identities = 244/272 (90%), Gaps = 1/272 (0%) Strand=Plus/Plus Query 8346 TCACTCT-GTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGC 8404 ||||||| || ||||||||||||||||||||| ||||| |||||||||||||||| | Sbjct 71 TCACTCTCGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAACCTCCAC 130 Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 ||||||||||||||| |||||||||||||||||||| |||||||||||||||||| | Sbjct 131 CTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGACGTG 190 Query 8465 AGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGC 8524 |||||| ||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 191 TACCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGC 250 Query 8525 CAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCT 8584 |||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||| Sbjct 251 CAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCACCTCGGCCTCCCAAAGTGCT 310 Query 8585 GGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 |||||||||||| |||||||| ||||| |||| Sbjct 311 GGGATTACAGGCGTGAGCCACTGCGCCCGGCC 342 >seq178 Length=73968 Score = 183 bits (202), Expect = 3e-41 Identities = 344/499 (69%), Gaps = 10/499 (2%) Strand=Plus/Minus Query 23201 TATTCATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTAC 23260 || ||||||| || ||||||||| || || ||| |||| || |||||||| |||| Sbjct 5534 TACTCATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTAC 5475 Query 23261 CCTCTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTT--T 23318 | | ||| || |||||||||||||| ||||| | |||||| | | || | Sbjct 5474 CTTGTAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACA-ATTTTGCT 5416 Query 23319 ACATGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATC 23378 || | | | || ||| | ||||| ||||||||||||||||||| ||| |||| Sbjct 5415 CCACCA-AGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATT 5357 Query 23379 ATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGA 23438 ||| ||||| |||| || ||||| | || || ||| ||| || ||| || | Sbjct 5356 CGCGTTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGT 5297 Query 23439 AACAGCATC---TTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATA 23495 ||| || || | |||| || ||| | || || |||| | | || Sbjct 5296 AACCGCTTCCGCTATAATAGCTTCTACAGTTT-TTGTTGG--AGGTCGTGCACGAAGATG 5240 Query 23496 CTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATT 23555 | || || | |||||||||||||||||| | |||||||| | | ||| | ||| || Sbjct 5239 AGTGAATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTT 5180 Query 23556 AGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGA 23615 ||||| |||||||||||||| | ||||| ||| || | |||||| |||| || || | Sbjct 5179 GGAAAAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGC 5120 Query 23616 TCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGC 23675 ||| |||||||| || || |||||||| ||||| || ||||||||| | |||||| | Sbjct 5119 TCCAGAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTCAGCAAATGAAGA 5060 Query 23676 ATTATAATCAGAAATCCAT 23694 | | ||| ||||||||| Sbjct 5059 TTCCTTATCGGAAATCCAT 5041 Score = 141 bits (156), Expect = 1e-28 Identities = 171/231 (74%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 23803 TACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCA 23862 |||||||| ||||| |||||||| || |||||||| |||||||||||||| ||||| Sbjct 4853 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 4794 Query 23863 GACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTA 23922 | | ||| || |||||| ||| | || |||||||||| || ||||||||||| Sbjct 4793 GGAATTTGGACTTCATTACTAAAACGTTCCACTAAATTTTCATTGACAATACCATCCGAG 4734 Query 23923 GCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTT--- 23979 || |||||||| || | ||| | ||||| | |||| ||| | | ||| ||| Sbjct 4733 GCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTCA-TCGTTAAGTTTATA 4675 Query 23980 -TTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 | ||||||||| ||||| || || | |||||||| ||||| |||||||| Sbjct 4674 CTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAA 4624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521421171312800