Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq217 91.5 2e-13 seq49 84.2 3e-11 >seq217 Length=80657 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 63784 CAAAAAGGTACGTGTGGTATGATTTATCGACAAGAAGATATGCCTTTTACCAAAGACGGT 63843 |||||||| || |||||| | ||||| |||||||||||||||||||| || || Sbjct 38931 CAAAAAGGAACAATTGGTATTACATATCGTCAAGAAGATATGCCTTTTACAGCCGAAGGG 38872 Query 63844 ATCGTACCCGATCTCGTCATCAATCCACACGCTTTTCCCAGTCGTATGAC 63893 || | ||| || || ||||| ||||| || ||| |||| ||||||||||| Sbjct 38871 ATTGCACCGGACCTTGTCATTAATCCTCATGCTATTCCAAGTCGTATGAC 38822 >seq49 Length=212187 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 50466 AGAAACAAAGGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGT 50525 ||||| |||| ||||| || |||||||| || || ||||||||||||||||| || Sbjct 169943 AGAAAAGAAGGTGATTTGGGTCCTGTTTATGGATTCCAATGGAGACATTTTGGTGCTGAG 169884 Query 50526 TACATAAATTGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAA 50576 ||||| ||||||| ||||| ||| |||| || |||||||||||| Sbjct 169883 TACATTGATTGCGATACGGATTACACTGGTAAAGGTGTTGATCAACTGCAA 169833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666989714313120