Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1195 165 2e-35 seq1291 150 4e-31 seq1502 145 2e-29 seq100 141 2e-28 seq526 91.5 4e-13 seq291 87.8 4e-12 >seq1195 Length=66079 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| || || ||||| || |||||||| || || ||| || ||| Sbjct 11246 CAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCCGAC 11305 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || | || ||| ||| ||||| |||||||||||||| || || ||||||||| Sbjct 11306 ACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAGCAA 11365 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||| || ||||| || ||||| || | || ||| | ||||||||| | Sbjct 11366 CGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAACATT 11425 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||| ||||| || ||||| || Sbjct 11426 CAAAAAGAGTCAACTCTTCATCTAGT 11451 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||||| || |||||||| || || | || || || || || Sbjct 11702 CAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCCGAT 11761 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| | || ||| ||||||||| ||||||||||| || || || || |||||| Sbjct 11762 ACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAGCAA 11821 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| ||||| || || |||||| | || ||| | || || || | Sbjct 11822 CGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAATATT 11881 Query 178104 CAAAAAGAATCAACACTGCAT 178124 |||||||| |||||||| ||| Sbjct 11882 CAAAAAGAGTCAACACTTCAT 11902 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || || || ||||| ||||| ||||| ||| || || Sbjct 11930 CAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCTGAT 11989 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| || ||||| || ||||| || |||||||| || |||||| Sbjct 11990 ACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAGCAA 12049 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || || || | |||||||| | |||||| | ||||||||| || Sbjct 12050 CGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAACATC 12109 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||||||||| || || || || Sbjct 12110 CAAAAAGAATCAACTCTTCACCTCGT 12135 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || ||||| |||||| | || || || ||| || Sbjct 11474 CAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCGGAT 11533 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| | || ||| || ||||| || || || || ||||| || ||||||||| Sbjct 11534 ACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAGCAA 11593 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || ||||| || || |||||| | || ||| |||| || || | Sbjct 11594 CGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAATATT 11653 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||||||||| || || ||||| ||| Sbjct 11654 CAAAAAGAATCCACTCTTCATCTCGTT 11680 >seq1291 Length=36373 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || || ||||| || || | || || ||||| || Sbjct 19999 CAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGTAGCGAT 19940 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| |||| ||||| || |||||||||||||| ||||| || ||| Sbjct 19939 ACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGATCAACAA 19880 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || |||||| | ||||||||| | | ||| ||||||| || | Sbjct 19879 CGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTTCCGATTACAATATT 19820 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||||||||||||| | || |||| Sbjct 19819 CAAAAAGAATCAACATTACA-CTTG 19796 >seq1502 Length=20690 Score = 145 bits (160), Expect = 2e-29 Identities = 158/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || ||||| || || || || || || |||||| Sbjct 12774 CAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCAGAT 12833 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| |||||||| ||||||||||| || || ||||| |||||| Sbjct 12834 ACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAGCAA 12893 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| ||||| ||||| | ||||||||| | || |||| | ||||| || | Sbjct 12894 CGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTAC-CTTGTCAGATTACAATAT 12952 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 |||||| || ||||| || ||||| || Sbjct 12953 CCAAAAGGAGTCAACTCTCCATCTCGT 12979 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || ||||| || ||||| || || || || || ||| || || Sbjct 13002 CAGATTTTTGTAAAGACCCTCACCGGGAAAACTATTACTCTTGAAGTTGAATCTTCTGAT 13061 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || | ||||| ||||||||| ||||||||||| |||||||| || || ||| Sbjct 13062 ACAATTGAACAAGTCAAGACAAAGATTCAAGACAAAGAAGGTATCCCTCCAGATCAACAA 13121 Query 178044 CGACTTATCTTCGCCGGAAAACAG 178067 || | || || || || |||||| Sbjct 13122 AGATTGATTTTTGCTGGCAAACAG 13145 >seq100 Length=143921 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || ||||| || ||||| || || || ||| || Sbjct 58659 CAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCTGAT 58600 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| ||||||||| || || ||||| || ||||| || |||||| Sbjct 58599 ACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAGCAA 58540 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | |||||||| | ||| | | |||||||| | Sbjct 58539 CGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTATCGGATTATAATATT 58480 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || || ||||| || Sbjct 58479 CAAAAAGAATCTACTCTCCATCTCGT 58454 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || |||||||| || ||||| || || || || || || ||| || Sbjct 58887 CAAATTTTCGTCAAGACTCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTGAT 58828 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| ||||||||| || || ||||| ||||| || || || ||| Sbjct 58827 ACCATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAACAA 58768 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| ||||| | |||||||| | ||| | | || ||||| | Sbjct 58767 CGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAATATT 58708 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| |||||||| || ||||| || Sbjct 58707 CAAAAGGAATCAACTCTCCATCTCGT 58682 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || ||||| || || || || || || ||| || Sbjct 59115 CAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTGAT 59056 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| |||||||| || |||||||| |||||||| || || ||| Sbjct 59055 ACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAACAA 58996 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | |||||||| | || | | |||||||| | Sbjct 58995 CGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACGTTGTCAGATTATAATATT 58936 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||||||||| || ||||| || Sbjct 58935 CAAAAAGAATCAACTCTCCATCTCGT 58910 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || || || ||||| ||||| || || || || ||| || Sbjct 59343 CAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCTGAT 59284 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| ||||||||| || |||||||| ||||| || || || ||| Sbjct 59283 ACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAACAA 59224 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | |||||||| | || | | || |||||| | Sbjct 59223 CGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAACATT 59164 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || || ||||| || Sbjct 59163 CAAAAAGAATCCACTCTCCATCTCGT 59138 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || ||||| || ||||| || || || | || Sbjct 59571 CAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAATGAT 59512 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || | || ||| ||||||||| || || |||||||| ||||| || || ||| Sbjct 59511 ACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAACAA 59452 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | |||||||| | ||| | | |||||||| | Sbjct 59451 CGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTATAATATT 59392 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||||||||| || ||||| || Sbjct 59391 CAAAAAGAATCAACTCTCCATCTCGT 59366 >seq526 Length=44740 Score = 91.5 bits (100), Expect = 4e-13 Identities = 152/217 (70%), Gaps = 7/217 (3%) Strand=Plus/Minus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCAG 177981 ||||||| |||||||| | || |||||||| | | ||| || | || |||| | Sbjct 29750 AAATTTT-GTGAAAACATTGACCGGAAAAACAGTTATCCTAGATTTTGATTCAAGC---G 29695 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || || | | ||| ||| | || | |||||||| || ||||| ||||||| Sbjct 29694 ACACTATTGATATGATTAAATCTAAGGTCGAGAAAAAAGAAGGCATTCCTCCTGACCAGC 29635 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| |||| || || || || || | || ||||||| ||| | | |||||||| Sbjct 29634 AACGTATTATTTTTGCTGGTAAGCAATTGGAGGATGGAAAAACTTTATCAGATTATAATA 29575 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | ||| |||| || || |||||||||| | ||||| Sbjct 29574 TTCAAGAAGAGTCTACGTTGCATCTTGTACTTAGACT 29538 >seq291 Length=210698 Score = 87.8 bits (96), Expect = 4e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||| | |||||||||||||| ||||| || || ||||| ||||| || || || | Sbjct 180983 AAGATTTATGACAAAGAAGGAATTCCTCCTGATCAACAACGCCTTATTTTTGCTGGCACG 181042 Query 178065 CAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 || | ||||| ||| | || |||| | |||||| | |||||||||| | ||| | || Sbjct 181043 CAATTAGAAGAAGGACGTAC-CTTGTCAGATTATTATATCCAAAAAGAGTGCACAATTCA 181101 Query 178124 TCTTGTTTTGAGACT 178138 |||||| | ||||| Sbjct 181102 TCTTGTACTTAGACT 181116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203573085392888