Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1195 104 2e-17 seq100 84.2 2e-11 >seq1195 Length=66079 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | || ||||| || || ||| || ||||||||||| || || Sbjct 11469 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 11410 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || || || ||||| ||||| || || || || ||||| | |||| Sbjct 11409 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 11350 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || |||| | ||| ||||||||| ||| | | | ||||||| || || || Sbjct 11349 ATTCCTTCTTTGT-CTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAAC 11291 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || || || || || || || || ||||| || |||||| Sbjct 11290 TTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATG 11242 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || ||||| || ||| || || ||||| || |||||||| Sbjct 11697 CCGCCACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAA 11638 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || || || || || ||||| || || || || ||||| | ||| Sbjct 11637 AGGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGG 11578 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| || ||| |||| | || || | | | || || ||||| || Sbjct 11577 ATACCCTCCTTATCT-TGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTAC 11519 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || ||||| || || || ||||||||||| || ||||| Sbjct 11518 GTCCAAGGTGATGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 11471 >seq100 Length=143921 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || | || ||| | || ||||| || ||| || || |||||||||||||| || Sbjct 59120 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGAC 59179 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || | || || || ||||| |||| ||| ||||| || | ||| Sbjct 59180 AATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGG 59239 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || ||| | ||| | ||||||| ||| | | | || || ||||| || Sbjct 59240 ATAC-CTTCTTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTAC 59298 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || |||||||| |||||||| || |||||||| ||||| Sbjct 59299 TTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 59346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462244755742400