Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2 190 2e-43 >seq2 Length=211661 Score = 190 bits (210), Expect = 2e-43 Identities = 313/443 (71%), Gaps = 20/443 (5%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| ||||| ||||||||||| || || || ||||| || | || | || | Sbjct 204655 TTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTGTAAACTAATTAAAT 204714 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAA---ATATTTTAGAGTACCCCAGTTCGGCGA 16790 |||| |||||||||||||| ||||| | | ||| | || ||| | | | Sbjct 204715 CCATAAAATCAAAAGGATTCT---CTGAATTATACAATTTTGCTCCACCAAGTGCCACTA 204771 Query 16791 TTAATCTATCCGCTACAAATTCTATATATTGGCACATTAA-TTCGCAGTTCATTCCTATA 16849 ||||||||| ||||||||||| ||||||| |||||| ||||| |||||| || || Sbjct 204772 ATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGC-GTTCATACCAATT 204830 Query 16850 AGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATA 16909 | | || || | ||||| || |||||| ||| ||||| |||||||||| ||| Sbjct 204831 AAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCGCTTCCGCTATA 204890 Query 16910 ATA----CTAGCAACTCGTTCCTCGGACG--GTGTATGTTTAAGATGTTTAAACATCAGA 16963 ||| ||| || | || | ||| | ||| ||| |||||| | || | ||| Sbjct 204891 ATAGCTTCTA-CAGTT--TTTGTTGGAGGTCGTGCATG---AAGATGAGTGAATAAGAGA 204944 Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023 ||||| ||||| ||||| ||||| || |||| || |||||||| ||||| || || Sbjct 204945 CATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAAAAGTTAAT 205004 Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083 || |||||| |||||| ||||||||||||||| || | ||||| | |||||||||||| Sbjct 205005 CCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAGAAAAGAAT 205064 Query 17084 ATACCCTCGACGGATGCAAACGC 17106 || || || || | |||||||| Sbjct 205065 ATTCCTTCAACAGCGGCAAACGC 205087 Score = 89.7 bits (98), Expect = 5e-13 Identities = 198/290 (68%), Gaps = 9/290 (3%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 ||||| | ||| || | ||| ||||||||| || || || || || || |||||| Sbjct 205294 ATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATGATCTGA 205353 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC--CACGTAGAATCGTTCCGCTA 17351 ||||| ||||| |||| ||||| | ||||| ||||| || || || |||||| ||| Sbjct 205354 AATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTAC-TA-AAACGTTCCACTA 205411 Query 17352 GATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT 17411 |||||| || || || || || || || || || ||||| | || ||| || Sbjct 205412 AATTTTCATTGACAATACCATCCGAGGCTGCAAAGAAGGCCAAAACGTGAGAAATAAAGA 205471 Query 17412 ATTTTTCGTC--CGGT--GTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACT 17467 ||||||| || || | || || | ||| || || | ||| ||||| | || ||| Sbjct 205472 ATTTTTCTTCATCGTTAAGTTTATACTC-CCAATCATTCATATCCTTGGAAAGGTCAACT 205530 Query 17468 TCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 || || |||||||| ||| | |||||||| ||||| | ||| || Sbjct 205531 TCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGAT 205580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517472697232920