Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1915 347 1e-90 seq2 183 4e-41 seq904 102 1e-16 >seq1915 Length=14346 Score = 347 bits (384), Expect = 1e-90 Identities = 677/989 (68%), Gaps = 16/989 (2%) Strand=Plus/Plus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA-CACATCAACG 54008 |||||| || || |||||||||| || |||||| |||| ||||| || || ||| Sbjct 10457 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACT 10516 Query 54009 ACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067 | | | || | | |||| | | ||||||||| ||||| | || |||||| || | Sbjct 10517 CCAATTATCATT--TGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAA 10574 Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 54127 |||| ||| | | | | ||| || ||||| ||||| ||||| | ||| | || | Sbjct 10575 AATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCA 10634 Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCT 54187 | ||| |||| |||||||| ||| || || || | | | || || |||||||||||| Sbjct 10635 AAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCT 10694 Query 54188 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 54247 || ||||| | ||||||||||| ||||||||||| | ||||| |||||||| ||||| Sbjct 10695 CCTTGATCAACATATCTAGCGGTATTATTATAAACGCGTAACATAGGAATAATTCCATTT 10754 Query 54248 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 54307 || |||||| || || | ||||| ||| | |||||||| ||| ||| | | Sbjct 10755 GAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACA 10814 Query 54308 CCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 54367 || || || ||||| | ||||| || | ||||||| ||| || ||||||||||| ||| Sbjct 10815 CCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCC 10874 Query 54368 TCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 54426 ||||| |||||| |||| ||||| |||||||| || || | ||| | | | || Sbjct 10875 TCTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAGGTGT 10933 Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486 || |||||||| || || ||||| ||||| ||||| | ||||| || | |||||||| Sbjct 10934 GCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTA 10993 Query 54487 CGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 54546 || || ||||| | || ||||| | ||||| || || || || ||||| | ||| Sbjct 10994 AGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCAT 11053 Query 54547 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGT 54606 || || || | ||| | | || |||| | | || ||| |||| | ||| Sbjct 11054 ATGTTGGGGACGCTCAGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAGT 11113 Query 54607 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTT 54666 |||||| |||||||| || ||| | | |||| || ||||| || || || ||||| Sbjct 11114 TTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAAGTTT 11173 Query 54667 ATCCTTATATTTGTTAACTACATCCATGGTAATACTT----GAAATAATCGGAGAATGTT 54722 ||| | ||||| | ||| || ||| || ||||| || | | ||| Sbjct 11174 TTCC---GAATTGTTCATCACA-ATATTATAAGTTTTTTCAGAAATCATTGACGCGCGTT 11229 Query 54723 TCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATC-ACTTCACTAAATAGtttt 54781 |||| |||| ||||| | ||| ||| | | || ||||| | || | ||| | |||| Sbjct 11230 TCCCTGTTTTCGGATTTATATAATTATAAAGAT-CTTCAACAACATTGGAAAAAACTTTT 11288 Query 54782 tttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGA 54841 || |||||||| || ||||| || || || || | ||| || || | |||||| |||||| Sbjct 11289 TTAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGA 11348 Query 54842 TGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTT 54901 |||| || || | || || |||| || | || | | || ||||| || || | Sbjct 11349 TGTTTAGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTA 11408 Query 54902 ACTCCATTATATATTCCTTGGATAACCTT 54930 || || | ||| | |||| || ||||| Sbjct 11409 ACACCTTGATAAACTCCTGAAATGACCTT 11437 Score = 118 bits (130), Expect = 1e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 53690 ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 53749 ||||||||| |||||| ||| |||| ||||| || || || |||| | || | Sbjct 10126 ACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGAA 10185 Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809 |||| | ||||| || || | ||||||||| ||||| || || | ||||||||||||| Sbjct 10186 TATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATTA 10245 Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGAT 53869 || ||||| | ||| || || || || |||| ||||| ||||| ||||||||| Sbjct 10246 GATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGAT 10305 Query 53870 TCTATAATCGCTTTCCAGAC 53889 || | ||| ||| ||||||| Sbjct 10306 TCAAGAATTGCTGTCCAGAC 10325 >seq2 Length=211661 Score = 183 bits (202), Expect = 4e-41 Identities = 219/294 (74%), Gaps = 5/294 (2%) Strand=Plus/Plus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 || || | ||| | ||||||||| || |||||||| ||||| || ||||| || Sbjct 205288 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 205347 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT 24515 || |||||||| || |||||||| || || | ||| || ||||| ||| ||| ||||| Sbjct 205348 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 205407 Query 24516 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 24575 ||||||||||||| || || || || ||||||||| || ||||| || || ||| Sbjct 205408 ACTAAATTTTCATTGACAATACCATCCGAGGCTGCAAAGAAGGCCAAAACGTGAGAAATA 205467 Query 24576 AAATATTTTTCGTC-TGGTGTTAGTTTA---TTCCAATCATTGATATCTTTAGATATATC 24631 || ||||||| || | || | |||||| | ||||||||| ||||| || || | || Sbjct 205468 AAGAATTTTTCTTCATCGT-TAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTC 205526 Query 24632 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 ||||| || || ||||||||||| || || |||||||| ||||| | |||||| Sbjct 205527 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGAT 205580 Score = 176 bits (194), Expect = 5e-39 Identities = 322/463 (70%), Gaps = 8/463 (2%) Strand=Plus/Plus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 ||||||||| |||||| || || || |||||||| || ||||| |||||||||| Sbjct 204641 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 204700 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCC 23950 ||| || ||||| ||||| | ||||| |||||| | | ||| | Sbjct 204701 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAAT-TTTGCTCCAC 204759 Query 23951 CAATT--CAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCAT-TTCACA 24007 ||| | || ||| |||||||| || ||||| || |||||| ||||||| | ||| | Sbjct 204760 CAAGTGCCACTAAT-AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCG 204818 Query 24008 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 24067 ||||| || || | |||||||| | || | || | |||||||||||| || | || Sbjct 204819 -TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAAC 204877 Query 24068 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAA-ATGTTTAA 24126 ||| || | |||||||| | ||| |||| | ||| | | || || ||| | | Sbjct 204878 CGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCATGAAGATGAGTGA 204936 Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 | | | |||||| ||||| || || | || || |||| | ||||| ||||||||||| Sbjct 204937 ATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAA 204996 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | || | ||| ||||| | || | || || | |||||| || ||||| || | ||||| Sbjct 204997 AAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAG 205056 Query 24247 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTC 24289 ||||||| |||||||| || || ||||| || | ||| | ||| Sbjct 205057 AAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTC 205099 >seq904 Length=34060 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 54374 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 54433 |||||||| |||| | | || ||| ||||| |||||||| | | || || ||| Sbjct 10804 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 10863 Query 54434 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCG 54493 ||||| || || ||| || || ||||| |||| || || | || ||| || || || Sbjct 10864 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 10923 Query 54494 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 54553 ||||||| || ||||| | ||||||||| | | |||||||| |||||||| || Sbjct 10924 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 10983 Query 54554 GGTCTTTCAAC 54564 ||||||||||| Sbjct 10984 GGTCTTTCAAC 10994 Score = 91.5 bits (100), Expect = 2e-13 Identities = 194/286 (68%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 53558 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 53617 |||||||||||||| ||| ||||||||||||||| ||||||||||| ||| || Sbjct 9687 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 9746 Query 53618 ATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA- 53676 | |||||| | || | | || ||||| | | || | || || | |||||||| Sbjct 9747 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 9806 Query 53677 -TTGTCCAT---CTATT-ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCT 53731 || || || |||| ||||| | |||| ||| || || | ||||||||||||| Sbjct 9807 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 9866 Query 53732 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTT 53791 || |||| | | | ||||| | || ||||| || | |||| || | || || Sbjct 9867 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 9926 Query 53792 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 53837 || | ||| | ||||||| |||| || || | ||| |||||| Sbjct 9927 CCAAGATTCTTTTGATTAGATTTTTCATTGCAAGAATC--TATAAA 9970 Score = 82.4 bits (90), Expect = 9e-11 Identities = 134/192 (70%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 53147 ACTACTTGAAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTATACGGT 53203 |||||||||||||| ||| ||||| ||| || |||||||| || || || ||| Sbjct 9114 ACTACTTGAAATTCCCCACTTAATACACGTCTTTGA---TAAATATTGCTTGTGTATGGT 9170 Query 53204 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 53263 || | | ||||| ||||| | ||| ||| || |||||||| ||||| ||||| | | Sbjct 9171 TCAAAGCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATC 9230 Query 53264 AATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAA 53323 || ||| ||||| | || ||| ||||| || ||||| | | |||| | ||| Sbjct 9231 AACAAAGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCAT 9290 Query 53324 AGATCCGACGGT 53335 |||| || ||| Sbjct 9291 CGATCTGAAGGT 9302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593637966891120