Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_001659.2 Length=170101 Score E Sequences producing significant alignments: (Bits) Value seq2485 100 3e-16 >seq2485 Length=26482 Score = 100 bits (110), Expect = 3e-16 Identities = 230/341 (67%), Gaps = 18/341 (5%) Strand=Plus/Minus Query 98624 ATGGCCTACGAGGAAGTACTCTTTCCTGTGTGCTTTACAGGCAAGAAAAAGTATTACGGT 98683 |||||||||||||||||||| ||||| || ||||| || |||||||| |||| || Sbjct 23016 ATGGCCTACGAGGAAGTACTATTTCCAGTAGCGTTTACCGGAAAGAAAAAATATTTTGGC 22957 Query 98684 ATTGCTCATGTAAACACACCCAATTTTAATACAAAAGAATTATTCATCCGCGGAATAGAT 98743 |||| |||| | | || || || || | ||| ||| || || | ||||||||| Sbjct 22956 ATTGACCATGAAGAGACTCCTAACTTCGAACCAAGAGAGCCTTTTATAAGGGGAATAGAT 22897 Query 98744 ATCATTAAGCAGGGTCAAACAAAACTCACCAAAACGATAGGTACGCGAATTATG-GAAGA 98802 | | ||||||||| || | || | |||||| ||||| || |||||| |||| Sbjct 22896 ACTGTGAAGCAGGGTAAATCCCAAGTTTTCAAAACTATAGGGGATCGTATTATGCGAAG- 22838 Query 98803 ATCCATGAAACTGCGCCGCCCTGAGGACC-ATCGCCCCCCTCTTATTGAAATCGTTAAAA 98861 | ||| | | | | | || ||| | || ||| || ||| || Sbjct 22837 GGCTATGGATAT------TAATAACGTCCAATCACTCC-------ATGAGATTGTTGAAG 22791 Query 98862 CGGTTTTGAAGGATGCTGTGGTTAA-CATGAAGCAGTGGAATTTTGAAGACTTCATCCAA 98920 ||| | | ||||||| | |||| |||| ||||||||||||||||| | || || | Sbjct 22790 ACGTTCTCAGGGATGCTATAATTAATCATG-AGCAGTGGAATTTTGAACAATTTATAAAG 22732 Query 98921 ACAGATGCGTGGAGACCGGACAAAGACAACAAAGCAGTCCA 98961 || || || |||| ||| || ||||| |||||||| || || Sbjct 22731 ACTGACGCTTGGAAACCCGATAAAGATAACAAAGCTGTTCA 22691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544118543303640