Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq2177 98.7 8e-16 seq81 84.2 2e-11 >seq2177 Length=17275 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||| | ||| ||||| |||||||||||||| || | ||||| || |||| Sbjct 3956 AGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAGAGGGTACGGCCGTCT 3897 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || |||||||| || ||||||| | |||||||| ||| | ||||| ||||| Sbjct 3896 TCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCT 3837 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 || ||| ||| || ||| | | ||| || | || ||| | ||| || ||| Sbjct 3836 TGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTC 3777 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| | ||||| || || |||||||| Sbjct 3776 TTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 3745 >seq81 Length=89240 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || || || || | ||||||||| || ||||| | || ||| || | Sbjct 50320 TTCCGCCACGTAGTCTAAGTACAAGATGCAAAGTTGATTCCTTATAGATACCATAATCTG 50261 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || | | | | ||||| | ||| | || |||||||||| | |||||||| | Sbjct 50260 ACAAGATGTAATCATCCTCTAATTGTGTACCAGCATAAATAATACGTTGCTGGTCAGTAG 50201 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||| ||||| ||||||||||||| ||||| | | ||||| | | | | Sbjct 50200 GAATACCTTCTTTGTCTTCGATCTTTTGTTTAACCTGAGCAATAGTATTATTTGATTTCA 50141 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||| || ||| || |||||| ||||| | |||||| Sbjct 50140 CATCAAGCGTTATGGTTTTTCCGAATAGCGTTTTCACAAAAACTTGCAT 50092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422201206525604