Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq157 98.7 8e-16 seq188 87.8 1e-12 >seq157 Length=142614 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||||||| |||| || | || || |||||||||||| ||| || || Sbjct 36491 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 36550 Query 25095 GAGACGGTGGC-CGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | | ||||||| | || ||||| ||||| | || |||||| Sbjct 36551 GATACCATTGATCAAGTTAAAGCAAAGA-TTCAAGATAAGGAAGGAATTCCTCCAGATCA 36609 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||| | | ||||| || || ||||||||||||||| | ||| || | ||||| || Sbjct 36610 ACAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTGTCAGATTATAA 36669 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||| ||||| ||||| || | || | || ||| |||| || Sbjct 36670 TATTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGG 36717 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || | || || ||||| |||||| ||| || || | Sbjct 37403 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 37462 Query 25095 GAGACGGTGG-CCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | | ||||||| | || ||||| |||||| | || |||||| Sbjct 37463 GATACCATAGACCAAGTTAAAGCAAAGA-TTCAAGATAAGGAAGGTATTCCTCCAGATCA 37521 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | | ||||| || || ||||||||||||||| ||| | | ||||| || Sbjct 37522 GCAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAA 37581 Query 25214 TATTCAAAAGGAATCTACTCTTCA 25237 ||||||||| ||||||||||| || Sbjct 37582 TATTCAAAAAGAATCTACTCTCCA 37605 Score = 89.7 bits (98), Expect = 4e-13 Identities = 110/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 25113 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 25172 ||||||| | || ||||| |||||| | ||| |||||||||| | | ||||| || Sbjct 37254 AAGCAAAGA-TTCAAGATAAGGAAGGTATCCCCCCAGATCAACAACGCTTGATCTTCGCC 37312 Query 25173 GGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACT 25232 || ||||||||||||||| | ||| | | || || ||||||||||||||||| ||| Sbjct 37313 GGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAATATTCAAAAGGAATCAACT 37372 Query 25233 CTTCACATGGTGTTACGATTACGAGGAGG 25261 || || | || | || ||| |||| || Sbjct 37373 CTCCATCTCGTACTTCGCTTAAGAGGTGG 37401 >seq188 Length=104369 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 25030 TAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAAC 25089 |||| |||||||| || | |||||| | || || ||||||||||| ||| ||| Sbjct 83058 TAAACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAA 83117 Query 25090 CCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG 25149 || || | | | |||| |||||||| ||||||||||| | ||| | Sbjct 83118 GTAGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGG 83177 Query 25150 ATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGA 25207 |||||||| | | || ||||| || ||||| || |||||| | ||| | |||| Sbjct 83178 ATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTT--CCGA 83235 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||||||| ||||| || | ||| |||| | || ||||| || || Sbjct 83236 TTACAATATTCAAAAAGAATCAACATTACACTTGGTACTTCGTTTACGCGGTGG 83289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410740380782366