Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2177 129 6e-25 >seq2177 Length=17275 Score = 129 bits (142), Expect = 6e-25 Identities = 157/214 (73%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| |||||||| ||||||||||||||| | ||||| || || | Sbjct 3973 ATGCAAATCTTCGTAAAGACGCTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 4032 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAA-----ATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || | | | || |||| ||||| |||| || || ||||| |||||| | | Sbjct 4033 GATACCAT-----CGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAG 4087 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 |||||||||| ||||| | ||| || ||||| || || || | || ||||| ||||| Sbjct 4088 ACCAGCAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACT 4147 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| || || || || |||| || ||||| || Sbjct 4148 ACAATATTCAAAAAGAATCCACTCTTCATCTCGT 4181 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || || || || |||||| | || || ||| | || Sbjct 3745 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 3804 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | || | |||||||| |||||||| || || ||| | |||||| Sbjct 3805 GACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAG 3864 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || || | ||| |||||||| || || |||| || |||||| || || ||| Sbjct 3865 CAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGCCGTACCCTCTCAGATTATAAC 3924 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || || ||| | || || |||||||| Sbjct 3925 ATTCAAAAAGAGTCAACTCTTCATCTAGT 3953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515146624935440