Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq206 134 1e-26 >seq206 Length=70616 Score = 134 bits (148), Expect = 1e-26 Identities = 172/232 (74%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 97047 AGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGG 97106 ||||| ||| |||| ||| || |||| ||| || | || ||||||||||| ||||| Sbjct 45642 AGCATTAATATGATCATTATATATATGAGTATCACCCATGGTATGAATAAATTCACCAGG 45583 Query 97107 AACTA-AATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAA 97165 | ||| || | || ||||| || |||||| |||||||| || |||||| |||||||||| Sbjct 45582 A-CTACAACCCGTTACATGAGCAATCATATGAGTTAATATAGCATAGCTTGCAATGTTAA 45524 Query 97166 AAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGA-AAGCTTTCC- 97223 | || || || ||||| | |||| |||||||||||| | |||| || || |||| | Sbjct 45523 ATGGTACACCAAGTCCAACATCACATGATCTTTGATAAAGAAGACACGATAATCTTTTCG 45464 Query 97224 -ATCACACACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTT 97274 || | ||||| || || | || | |||||| || || || |||||||| Sbjct 45463 TATTTGATACATAGAATTGGCAAAACATATGACATGGTGGTAATGCCATTTT 45412 Score = 116 bits (128), Expect = 3e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 || || || |||||||| ||||||||||||||||||||||| || | || ||||||| | Sbjct 45210 TACTCAGCACCAAAATGTCTCCATTGGAATCCATAAACAGGACCCAAATCACCTTCTTTT 45151 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGC 97521 |||| | | |||| ||||| ||||| | ||| ||||| | |||||||| || Sbjct 45150 CTATGTGATAGCCCAATTTTATCCAAATATTCACGAGAACCATTACCGTCCCAAATATGA 45091 Query 97522 ACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCT 97581 | ||| | | | | | |||||| | ||| ||| | |||||||| || |||||| Sbjct 45090 ATACCTTTTTCGGTTAAATGTTTGCTATTTGTATTACCTTTAATAAACCATAATAATTCT 45031 Query 97582 TCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGG 97625 || | || | | | | ||| || | |||||||||||| | ||| Sbjct 45030 TCTATAATAGCACGCGTAAAAACGCGCTTAGTTGTTAATAAAGG 44987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346736372360330