Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2177 125 6e-24 seq188 122 8e-23 seq157 109 5e-19 seq1319 98.7 9e-16 seq97 95.1 1e-14 >seq2177 Length=17275 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||||||||| ||||| ||| | || || |||||| || ||||| ||| Sbjct 4169 GTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTCAAGTTGTTTACCA 4110 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | |||||||| ||||| || || || || |||||||| ||| |||||| ||| Sbjct 4109 GCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTGAATTTTGGTTTTT 4050 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || || |||| ||| |||| | ||| || || | ||| | ||||||||||| || || Sbjct 4049 ACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTTGCCGGTGAGCGTC 3990 Query 118722 TTTACAAAAATCTGCAT 118738 ||||| || || ||||| Sbjct 3989 TTTACGAAGATTTGCAT 3973 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | ||| |||||||||||||| ||||| || | || || |||||| Sbjct 4410 CACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTC 4351 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || ||||| || ||| | |||||||| |||||||| || || || || || |||||| Sbjct 4350 AAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTG 4291 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| ||| || || |||| ||| || | ||| || || | || | ||||| Sbjct 4290 GATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTT 4231 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||||||| |||||||| ||||| Sbjct 4230 TCCAGTGAGAGTTTTAACAAAAATTTGCAT 4201 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || |||||||| ||||| ||||| | ||| || ||| || | || || ||| Sbjct 4625 GTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACCA 4566 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || | ||| |||||||| ||||| || ||||| || ||| |||||| |||| Sbjct 4565 GCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGAATTTTGGTTTTA 4506 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 ||||| || | ||| || | || | |||||||| | ||| | ||| || || || || || Sbjct 4505 ACCTGATCAATGGTATCAGATGAT-TCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGT 4447 Query 118721 TTTTACAAAAATCTGCAT 118738 |||||||||||| ||||| Sbjct 4446 TTTTACAAAAATTTGCAT 4429 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||||||||| | || | || | || | || ||||||||||||||||| ||||| Sbjct 3973 TACCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTG 3914 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || || || || ||||| |||||| | || ||||| ||||| || || | Sbjct 3913 AGAGGGTACGGCCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGG 3854 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| ||||||| |||||| || || | ||||| | || | Sbjct 3853 GAATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAA 3794 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || | ||| | || || ||||| || ||||| || || || |||||| Sbjct 3793 CTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATG 3744 >seq188 Length=104369 Score = 122 bits (134), Expect = 8e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || |||||||| | | |||||||| | ||| || ||||||||||| ||||||||| Sbjct 83289 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCG--G 83232 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| ||| ||| || | |||||| ||||| | || | ||| || ||||| || | Sbjct 83231 AAAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGG 83172 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || || ||| |||||||| ||| || | |||| ||| || | || || | Sbjct 83171 GGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAA 83112 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || | || | ||||| || || || ||||| |||||||| |||||| Sbjct 83111 CTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATG 83062 >seq157 Length=142614 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| ||||| ||||||||||| || ||||| | ||| || ||| || | ||| Sbjct 37605 TGGAGAGTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGACCATCTTCCAATTGT 37546 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| | || |||||||| ||||| || || ||||| ||| ||| ||| Sbjct 37545 TTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTT 37486 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 |||||| || || | ||| || | | ||| || || | ||| | ||||| ||||| Sbjct 37485 GCTTTAACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTG 37426 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| ||||| Sbjct 37425 AGGGTCTTGACGAAAATTTGCAT 37403 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || || ||||||||||| || ||||| || ||| || ||| || | ||| Sbjct 36693 TGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGGCCATCTTCCAATTGT 36634 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| | || || ||||| ||||| || || ||||| ||| ||| ||| Sbjct 36633 TTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTT 36574 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 |||||| || || | ||| || || |||||| || | ||| | ||||| || || Sbjct 36573 GCTTTAACTTGATCAATGGTATCATTGGACTCGACTTCAAGGGTAATGGTTTTCCCAGTA 36514 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||| Sbjct 36513 AGGGTCTTGACGAATATTTGCAT 36491 >seq1319 Length=24104 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | ||| | | ||| | |||| || ||||||||||| || |||||||| Sbjct 16836 TACCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCTTTTTGGATATTGTAATCTG 16777 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||| || | ||||| || || |||| | || |||||||| || | Sbjct 16776 ACAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGG 16717 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| || |||||| ||| || |||||| || || | ||| || | | ||| | Sbjct 16716 GAATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTA 16657 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | ||||| ||||| ||||| || || ||||| ||||| Sbjct 16656 CTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 16608 >seq97 Length=146771 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 |||||| || || || ||||| |||| || ||| ||| || | ||| ||||||| | Sbjct 24417 CTCTTTCTGGATATTATAATCACTCAAGGTACGCTCATCTTCTAATTGTCTTCCAGCAAA 24358 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 || | ||| || || ||||| || || ||||||||| || || |||||| | Sbjct 24357 AATAAAACGTTGACTATTAGGAGGAATTCCTTCCTTGTCTTGGATCTTGCATTTAACTAG 24298 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 || ||| || | ||| ||||| | ||| |||||||| ||||| || |||||||| Sbjct 24297 GCTGATGGTATCAGACGACTCTACCTCCAAGGTTACCGTTTTTCCGGTTAGTGTTTTTAC 24238 Query 118727 AAAAATCTGCATGGC 118741 ||| | ||||||||| Sbjct 24237 AAATACCTGCATGGC 24223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433770817326148