Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq188 123 4e-23 seq157 107 3e-18 seq364 100 4e-16 seq942 98.7 1e-15 seq2177 96.9 5e-15 seq1319 93.3 6e-14 seq38 91.5 2e-13 >seq188 Length=104369 Score = 123 bits (136), Expect = 4e-23 Identities = 171/245 (70%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 |||||| ||||| || |||||||| ||||| ||||| ||||| | | | ||| || Sbjct 83272 TACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTC 83213 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||| ||||| |||||||| || || | ||| |||||||| || ||||||||||||||||| Sbjct 83212 TAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTG 83153 Query 146188 NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTT 146247 ||||| |||||| ||||||| || || ||||| Sbjct 83152 AATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTT 83093 Query 146248 ACCTGTTAATGTTTTAATGAATATTTGCATTTTATTAGAAAAATAT-TTGTTaaaaaaaa 146306 ||| || | |||||||| || |||||||| | ||| |||||| | ||| ||||||| Sbjct 83092 ACCAGTAAGTGTTTTAACAAAAATTTGCATGT--TTAAAAAAATTTATTGGGGAAAAAAA 83035 Query 146307 TAATT 146311 | ||| Sbjct 83034 TTATT 83030 >seq157 Length=142614 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | ||| | ||| | ||| |||||||| |||||||||||||| Sbjct 36717 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 36658 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | || ||| || |||||||| ||||| || || || | ||| ||||| |||||| Sbjct 36657 AAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGA 36598 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 36597 ATTCCTTCCTTATCTTG 36581 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | ||| | ||| | |||||||||||| ||||||||||| || Sbjct 37629 CCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGAT 37570 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || |||||||| ||||| || ||||| | ||||||||| |||||| Sbjct 37569 AAAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGA 37510 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 37509 ATACCTTCCTTATCTTG 37493 >seq364 Length=140482 Score = 100 bits (110), Expect = 4e-16 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCT-TTAGATATATTATAATCTGA 146109 ||||| | ||||| | ||| | ||| || ||||| ||| || || |||||||||||||| Sbjct 20944 CCACCACGTAGTCTAAGTACAAGATGCAACGTAGACTCTCTTTGA-ATATTATAATCTGA 21002 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | |||| | | ||| || ||||| || ||||||||||| | | |||||| || ||||| Sbjct 21003 TAAAGTTTTTCCATCCTCCAATTGCTTACCAGCAAAAATAATACGTTGCTGGTCAGGAGG 21062 Query 146170 AATTCCTTCTTT 146181 ||| |||||||| Sbjct 21063 AATGCCTTCTTT 21074 >seq942 Length=78137 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| || | ||||||||| ||||||| || || || | | ||||||| ||||| Sbjct 25471 CCACCCCTTAATCTTAATACTAAATGTAGCGTGGACTCATCACATATATTGTAATCACTT 25412 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | || ||| || | ||| || ||||||||||| |||||||| ||||| || || Sbjct 25411 AAAGTACGGCCATCTTCAAGTTGCTTACCAGCAAAAATTAATCTTTGTTGATCTGGTGGT 25352 Query 146171 ATTCCTTCTTTATC 146184 || |||||||| || Sbjct 25351 ATACCTTCTTTTTC 25338 >seq2177 Length=17275 Score = 96.9 bits (106), Expect = 5e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 146080 AGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 ||| |||||||| || |||||||| |||||||| | | ||| || ||||| || || Sbjct 4626 AGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACC 4567 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||| |||||||| | ||||||||| ||||| || || ||||||||||| Sbjct 4566 AGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTG 4519 Score = 93.3 bits (102), Expect = 6e-14 Identities = 152/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||||| | ||| | ||| | ||| || ||||| || ||||||||||| Sbjct 3971 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAG 3912 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || || || | |||||| ||||| ||||| | | |||||| || || ||| Sbjct 3911 AGGGTACGGCCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 3852 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||| ||||| ||| || ||| ||| ||| Sbjct 3851 ATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACT 3792 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || |||||||| || || || | ||||||| ||| |||||||| Sbjct 3791 TCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 3745 >seq1319 Length=24104 Score = 93.3 bits (102), Expect = 6e-14 Identities = 152/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | || | ||| | ||| || ||||| ||||| |||||||| Sbjct 16834 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCTTTTTGGATATTGTAATCTGAC 16775 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || |||||||| || ||||| ||||| | |||||||||||| ||| Sbjct 16774 AAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGA 16715 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| |||||||| |||||| Sbjct 16714 ATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACT 16655 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || || |||||||| || | || |||| ||| |||||||| Sbjct 16654 TCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 16608 >seq38 Length=163822 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/132 (76%), Gaps = 6/132 (5%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||||||||| ||||||| ||||||||| | ||||||||||||| Sbjct 74641 CCACCTCTTAATCTTAATACTAAATGTACAGTAGATTCATGTTGTATATTATAATCTTCT 74582 Query 146111 AGAGTTCTGCTATCATCT---AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || ||| ||||||| | |||||| || || | || ||| | ||| ||||| ||| Sbjct 74581 AAAG---TGCGATCATCTTCAAGTTGTTTACCGGCCATAAGCAAACGTTGTTGATCTGGA 74525 Query 146168 GGAATTCCTTCT 146179 || || |||||| Sbjct 74524 GGTATACCTTCT 74513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743421665012480