Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2 257 2e-63 >seq2 Length=211661 Score = 257 bits (284), Expect = 2e-63 Identities = 374/527 (71%), Gaps = 6/527 (1%) Strand=Plus/Plus Query 13890 CTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAG 13949 || ||||| ||||| || ||||||||| || || | |||||||||||| || | Sbjct 204631 CTCTGTTACTCATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTG 204690 Query 13950 TTTTACCTTCCAGTGATATATTT---TCCATAAAATCAAATGGATTTGTTGACATAAACA 14006 ||||||||| || | || || |||||||||||||| ||||| ||| || ||| Sbjct 204691 TTTTACCTT---GTAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACA 204747 Query 14007 CTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACA 14066 ||| | | ||| ||| | | || ||||||||| || | || |||||||||| || Sbjct 204748 ATTTTGCTCCACCAAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCA 204807 Query 14067 TTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTT 14126 |||||| |||||||| |||| || || || | | | ||||||||||||| || Sbjct 204808 TTAAATTCGCGTTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTT 204867 Query 14127 CTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTA 14186 |||| | || || || ||||||| | | ||| | | ||| | | | Sbjct 204868 CTATTGTAACCGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCGTGCATGAA 204927 Query 14187 GATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTT 14246 |||| | || | | ||| |||||||||||||| | || ||||||| | ||| |||| Sbjct 204928 GATGAGTGAATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTT 204987 Query 14247 CGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGA 14306 |||| ||||| |||||||||||||||| ||||| ||| ||||||||||| |||| |||| Sbjct 204988 CGTTGGAAAAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGA 205047 Query 14307 ATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACG 14366 | | ||| |||||||||||||| ||||| || |||||||||| | ||||| |||| | Sbjct 205048 AAGCTCCAGAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTCAGCAAATG 205107 Query 14367 ATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttttttt 14413 | | || || | || |||||| |||||| || | ||||||| Sbjct 205108 AAGATTCCTTATCGGAAATCCATCGAAGAGCCCAATCCGCTTTTTTT 205154 Score = 147 bits (162), Expect = 2e-30 Identities = 193/264 (73%), Gaps = 5/264 (2%) Strand=Plus/Plus Query 14498 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCT 14557 |||||||| || || || ||||| || |||||||| |||||||||||||| |||||| Sbjct 205318 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 205377 Query 14558 GACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14616 | ||| || || | | ||||| | ||| | ||||||||||| || |||||||| Sbjct 205378 GGAATTTGGACTTCATTACTAAAA-CGTTCCACTAAATTTTCATTGACAATACCATCCGA 205436 Query 14617 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTT--- 14673 |||||||| || ||||| | || ||||||| ||| ||||||| | | ||||| Sbjct 205437 GGCTGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTCATCGTTAAGTTTATA 205496 Query 14674 TTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAAC 14733 | |||||| | |||||| ||||| || ||||| ||||| |||||||| ||| | Sbjct 205497 CTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCTTC 205556 Query 14734 AGCTTTTTTATACATTACCCATAT 14757 || ||||| |||||| ||| || Sbjct 205557 GGCCTTTTTGTACATTTGCCAGAT 205580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482277655592920