Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq188 111 1e-19 seq157 98.7 8e-16 seq2177 93.3 3e-14 seq1319 82.4 6e-11 >seq188 Length=104369 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || |||| | |||||||| ||| | |||||||||||||||||| ||||| |||| Sbjct 83289 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAA 83230 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| || ||||| || ||| | || | | |||||||||| ||| Sbjct 83229 AGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGG 83170 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| ||||| ||||| || ||||| | | | || || | || | Sbjct 83169 ATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACT 83110 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAA 18332 || | || ||| |||| || || | |||||| |||||||||||||| |||||| Sbjct 83109 TCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTTAAA 83056 >seq157 Length=142614 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | || || ||||||||||||||||| || || || | || || | |||| Sbjct 36702 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGGCCATCT 36643 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||||||||| || || |||| | | ||||||||| || | ||||||||||| Sbjct 36642 TCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCT 36583 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | |||| || || || ||| || ||| || |||| ||||| ||| ||| | Sbjct 36582 TGAATCT-TTGCTTTAACTTGATCAATGGTATCATTGGACTCGACTTCAAGGGTAATGGT 36524 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| || || | || || || || |||||||| Sbjct 36523 TTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 36491 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || ||||| || | |||||| | || || || |||||||||||||| || || || | Sbjct 37629 CCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGAT 37570 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||||||| || || |||| | | ||| ||||| || Sbjct 37569 AAAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGA 37510 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||| | |||||| | || | | | || ||| || ||| Sbjct 37509 ATACCTTCCTTATCTTGAATCT-TTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAAC 37451 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||| || |||| ||||| | || || || ||||||||||| Sbjct 37450 TTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 37403 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 |||||| | || || |||||||| |||||||| || ||||| | | || | ||| Sbjct 37387 AAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATC 37328 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 |||||||||||| || || |||| | | ||||||||| ||| | ||||||||||| Sbjct 37327 TTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATC 37268 Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 ||| | |||| || || || | | || ||| || |||| ||||| || || Sbjct 37267 TTGAATCT-TTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTG 37209 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTT 18321 |||| ||||| | || || || ||||||| Sbjct 37208 TTTTACCGGTGAGGGTCTTGACGAAAATTT 37179 >seq2177 Length=17275 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || |||| |||||| | ||||| ||||| |||||||||||||| || || | Sbjct 3971 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAG 3912 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||| | ||||||||| || | ||||| | ||| || || ||| Sbjct 3911 AGGGTACGGCCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 3852 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||||| |||| || || || ||| |||||| | || Sbjct 3851 ATTCCTTCTTTGTCTTGAATTT-TTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAAC 3793 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||||| | || ||||| | ||||| || || |||||||| Sbjct 3792 TTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 3745 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | |||||| |||||||||||||| ||||| || || | | || || |||| Sbjct 4640 AGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCT 4581 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||| || || || | || | | ||| ||||| || | || || ||||| Sbjct 4580 TCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCT 4521 Query 18234 GCAATTT--GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 ||||| ||| || ||||| ||| || ||| | ||| |||| ||| || Sbjct 4520 TGAATTTTGGTT--TTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCG 4463 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || || || | ||||||||||||||||||||| Sbjct 4462 TCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 4429 >seq1319 Length=24104 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || ||||| |||||||| || ||||| || | || || | ||||||||||||| Sbjct 16810 TGGAGAGTTGACTCTTTTTGGATATTGTAATCTGACAAGGTACGTCCATCTTCCAATTGT 16751 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| | | ||| |||||| ||| | |||||| || || ||| | | Sbjct 16750 TTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCT-T 16692 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || || ||| || || || ||| ||||| || || |||| ||||| Sbjct 16691 CGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGT 16632 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 | || || || ||||||||||| Sbjct 16631 AAGAGTCTTAACGAAAATTTGCAT 16608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379291900539405