Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq2177 109 5e-19 >seq2177 Length=17275 Score = 109 bits (120), Expect = 5e-19 Identities = 167/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 24824 TTAACA-TCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTC 24882 |||||| ||||||| || || ||||||||| | ||||| || || || ||| | || || Sbjct 3736 TTAACAATCATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTT 3795 Query 24883 GAATCGAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCG 24942 ||||| ||||| | | || ||||| | ||||||| | |||||||| | || Sbjct 3796 GAATCTTCCGACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCC 3855 Query 24943 GTTGACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAAC 25002 |||||||||||| | || | || ||||||||||| ||||| | || | Sbjct 3856 CCAGACCAGCAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGCCGTACCCTCTCA 3915 Query 25003 GATTACAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 ||||| | ||| || |||||| | || |||||| |||| | ||| | ||||||||| Sbjct 3916 GATTATAACATTCAAAAAGAGTCAACTCTTCATCTAGTACTTCGACTTCGCGGAGGT 3972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418246549736480