Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1915 174 1e-38 seq2 154 1e-32 seq2177 138 1e-27 seq157 113 4e-20 seq188 96.9 3e-15 seq1319 82.4 7e-11 >seq1915 Length=14346 Score = 174 bits (192), Expect = 1e-38 Identities = 414/621 (67%), Gaps = 6/621 (1%) Strand=Plus/Plus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 |||||| | | ||||||||||||||| | ||| || || || || | || || || || Sbjct 10532 TTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAAAATAAATCCCGTGCACG 10591 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 || || ||||| || || || ||||| ||||||| ||| || || | ||| | |||||| Sbjct 10592 AACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCAAAAATGTCAGGATGCCA 10651 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 || || | |||| |||||||||||||| | || || || || ||||| || || | Sbjct 10652 CGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCTCCTTGATCAACATATCT 10711 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 || || || || || || | || ||| || | | || || || || | || Sbjct 10712 AGCGGTATTATTATAAACGCGTAACATAGGAATAATTCCATTTGAATAACCATTTGTTCC 10771 Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | | || ||| | || |||| ||| |||| || | ||| || || || | | Sbjct 10772 AGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACACCAATACCACCTGCAGT 10831 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 || || ||||| |||||| ||||| ||| || ||||| ||||| || || ||||| Sbjct 10832 CTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCCTCTATTGAATCATCTTT 10891 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | | | | ||||| || | ||| | | | || || | || |||| || Sbjct 10892 CATAGTTAAAAGAAAACAACTCGAAAGTTGAGGTCTAGGTGTGCCAGCATTAAACAAAGT 10951 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTC-GACATTAGATTGTACGTGTCGATGGCGGCAT 23819 ||| ||||| |||||| | | ||| ||||| |||||||| || || || || || | Sbjct 10952 CGGAGATGCGTGAGTAAAG-AACTTTTCTGACATCAGATTGTAAGTTTCAATAGCAGCTT 11010 Query 23820 CAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC-- 23877 | || || |||||||| || || | || |||||||| | ||| | ||| || | ||| Sbjct 11011 CGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCATATGTTGGGGACGCTCAG 11070 Query 23878 GACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATA 23937 | | | | | | ||| || ||||| || | || | ||||||||||||||||| Sbjct 11071 CAACTTTTCCACCT--ATTCGTAAAAGATAAGATCTTTCAAGAGTTTTAAATCCAAAATA 11128 Query 23938 GTCATAGTTAAAGTCACGATC 23958 | ||| ||| | || | ||| Sbjct 11129 ATTATATTTATAATCTCTATC 11149 Score = 96.9 bits (106), Expect = 3e-15 Identities = 266/407 (65%), Gaps = 3/407 (1%) Strand=Plus/Plus Query 22388 ATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGA 22447 || ||| |||||| || ||||||||||| ||| | | ||||||||| | | Sbjct 9358 ATTATCTTATTTTTCATTTGATCGTTCCACAGACCCAAATCTACCAAATCTTTCAATAAC 9417 Query 22448 TGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTG 22507 | |||| || | |||||| ||||| | | || || ||||||||||||||| || Sbjct 9418 CAAGGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTA 9477 Query 22508 AACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGC 22567 | ||||| ||| ||||||| |||| ||| || | || || || || ||||| || Sbjct 9478 TAAGGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGT 9537 Query 22568 GCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAG 22627 || | || || || |||| | || || | ||| ||||| || | || ||| Sbjct 9538 GCGAGCAATAATGAATTTCGTACACCATGTTCTGATATTTTTTGTTTCAACAAATTCCAA 9597 Query 22628 TCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTC 22687 ||||| | ||| | ||| ||||| ||||||||||||||| || | ||| Sbjct 9598 TCCCATAAATCAGTAGGCTCAACATT---CCACATATCGTATTGTAAAATGCCTTTGGAA 9654 Query 22688 GCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCC 22747 |||| |||| |||| || ||||| || || | | ||||| || || Sbjct 9655 ACCGGTGATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCT 9714 Query 22748 TCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTC 22794 || || || || | ||| || ||||| || |||| ||| |||| ||| Sbjct 9715 TCTAATGCACCATGATACATTGTCTCAAATATTTGCTTATTCAGTTC 9761 >seq2 Length=211661 Score = 154 bits (170), Expect = 1e-32 Identities = 214/296 (72%), Gaps = 9/296 (3%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||||||||| ||||| || |||||||| || || ||||| ||||| Sbjct 205580 ATCTGGCAAATGTACAAAAAGGCCGAAGCTTCATTTTGGACTGTTGAGGAAGTTGACCTT 205521 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGA-GAGAAATT--TTATT 57683 || |||||| ||| |||||||| | || || || ||| || ||||| ||||| Sbjct 205520 TCCAAGGATATGAATGATTGGGAGTATAAACTTAACGA---TGAAGAAAAATTCTTTATT 205464 Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743 ||||| ||||| || || || || || ||||||||||| || || ||||| || ||| Sbjct 205463 TCTCACGTTTTGGCCTTCTTTGCAGCCTCGGATGGTATTGTCAATGAAAATTTAGTGGAA 205404 Query 57744 AGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803 | ||| | ||||| ||| | | || || ||||| ||||| |||||||| | Sbjct 205403 CGTTTTAGTAATGAAGTCCAAATTCCAGAAGCAAGATGTTTTTATGGATTTCAGATCATG 205344 Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 || ||||| | |||||||||||||| || || | || ||| | || | ||||| Sbjct 205343 ATCGAAAATATCCATTCAGAAATGTACTCCCTCTTGATTGATTCTTATATCAAGGA 205288 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT-GCGGCAATATTTTGGAT 58039 ||||| ||||| || ||||| ||||||||||| || |||||| ||| |||| |||||| | Sbjct 205087 GCGTTTGCCGCTGTTGAAGGAATATTCTTTTCTGG-AGCTTTCGCGTCAATCTTTTGGTT 205029 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 |||||| | || ||||||| || | || ||| |||||| | || || || || || Sbjct 205028 AAAGAAAAGAGGAATGATGCCAGGATTAACTTTTTCCAACGAACTAATTTCTCGAGATGA 204969 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCT 58126 || | ||| ||||||||| || || Sbjct 204968 AGGATTGCATTGTGATTTTGCATGTCT 204942 >seq2177 Length=17275 Score = 138 bits (152), Expect = 1e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| ||||||||| ||||| || || || || || || || |||||| | || |||||| Sbjct 3740 CAATCATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAAT 3799 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| | | || || ||| | ||| ||||| ||||| | || || | Sbjct 3800 CTTCCGACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAG 3859 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||| ||||| || |||||||||||||| | |||||| || | |||| Sbjct 3860 ACCAGCAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGCCGTACCCTCTCAGATT 3919 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||||||||||| || ||||||||||| |||||| |||| | || |||| Sbjct 3920 ATAACATTCAAAAAGAGTCAACTCTTCATCTAGTACTTCGACTTCGCGGAGGTA 3973 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||||||||| || || |||||||| |||||| | ||||| || | || Sbjct 3973 ATGCAAATCTTCGTAAAGACGCTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 4032 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| || ||| | ||| || ||||| || | || || |||||| Sbjct 4033 GATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 4092 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || ||||| || |||||||| ||||| | || || | | | || | ||| || || Sbjct 4093 CAACGTCTCATTTTCGCTGGTAAACAACTTGAGGA-TGGACGAACCCTTTCCGACTACAA 4151 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||||||||| ||||||||||| || || Sbjct 4152 TATTCAAAAAGAATCCACTCTTCATCTCGTTCT 4184 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| ||||| || || || || || ||||| ||| | || || ||| | || Sbjct 4429 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 4488 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || ||| ||| | ||| || || || || | || || || ||| Sbjct 4489 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAG 4548 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || |||||||| || || |||||||| | ||| | ||||||||| Sbjct 4549 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAAC 4608 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||||||||| |||||||| || || || Sbjct 4609 ATCCAAAAAGAATCAACTCTTCACCTCGTCCT 4640 >seq157 Length=142614 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || || || ||||| || ||| | || ||||| | || Sbjct 37403 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 37462 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || || ||| || ||| | | | |||||||| | || || || || Sbjct 37463 GATACCATAGACCAAGTTAAAGCAAAGATTCAAG-ATAAGGAAGGTATTCCTCCAGATCA 37521 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || | || |||||||| ||||| |||||||| | ||| | |||||||| Sbjct 37522 GCAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAA 37581 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||||||||||| ||||| ||||| |||||| | || |||| ||| Sbjct 37582 TATTCAAAAAGAATCTACTCTCCATCTCGTACTTCGTCTTCGGGGTGGT 37630 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || ||||| || ||| | || || || |||| Sbjct 36491 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGA---GTCC 36547 Query 31253 ---GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || | | || || ||| || ||| | | | |||||||| | || || || Sbjct 36548 AATGATACCATTGATCAAGTTAAAGCAAAGATTCAAG-ATAAGGAAGGAATTCCTCCAGA 36606 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || || || |||| |||||||| ||||| |||||||| ||| || ||||| Sbjct 36607 TCAACAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTGTCAGATTA 36666 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| |||||||||||||| ||||| ||||| ||||| Sbjct 36667 TAATATTCAAAAAGAATCAACTCTCCATCTCGTACT 36702 >seq188 Length=104369 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||||||||||||||| || || || || || || ||||| || || | || |||||| Sbjct 83059 AAACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAG 83118 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||| | |||| | |||||| | | ||| || || ||||| | || || || Sbjct 83119 TAGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGA 83178 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA--CTCTATGACTATGAGCGAT 31366 || || ||| ||||||| ||||| |||||||| ||||| | | ||| | |||| Sbjct 83179 TCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTT--CCGAT 83236 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || |||||||||||||| || | || |||||||| Sbjct 83237 TACAATATTCAAAAAGAATCAACATTACACTTGGTACTT 83275 >seq1319 Length=24104 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| || || ||||| || || | || || || | || Sbjct 16608 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 16667 Query 31253 GA---CAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || || | || || ||| || || ||||| |||||| | || || || Sbjct 16668 GATACCATTGACCAA---GTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGAT 16724 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| || | || || || || ||||| |||||||| | | | || || ||||| Sbjct 16725 CAGCAACGCTTGATCTTTGCCGGTAAACAATTGGAAGA-TGGACGTACCTTGTCAGATTA 16783 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || |||||||| || ||||| ||||| || || Sbjct 16784 CAATATCCAAAAAGAGTCAACTCTCCATCTCGTGCT 16819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445703608230480