Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq206 109 1e-18 seq2 96.9 7e-15 >seq206 Length=70616 Score = 109 bits (120), Expect = 1e-18 Identities = 166/233 (71%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 35267 GAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAG 35326 |||||| | | ||||| || | || |||||| | |||| | || || ||| ||| Sbjct 45029 GAAGAATTATTATGGTTTATTAAAGGTAATACAAATAGCAAACATTTAACC--GAAAAAG 45086 Query 35327 ATA--CACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACG 35384 || || || ||| ||| |||||| || || |||| |||||| | | ||| ||| Sbjct 45087 GTATTCATATTTGGGACGGTAATGGTTCTCGTGAATATTTGGATAAAATTGGGCTATCAC 45146 Query 35385 ATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTG 35444 ||||| ||| || |||||||| || || || |||||||||||| | ||||||||||||| Sbjct 45147 ATAGAAAAGAAGGTGATTTGGGTCCTGTTTATGGATTCCAATGGAGACATTTTGGTGCTG 45206 Query 35445 AATA---TGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTG 35494 | || |||| || | | ||||| ||||| || ||| |||||||| || Sbjct 45207 AGTACATTGAT---TGCGATACGGATTACACTGGTAAAGGTGTTGATCAACTG 45256 >seq2 Length=211661 Score = 96.9 bits (106), Expect = 7e-15 Identities = 228/344 (66%), Gaps = 9/344 (3%) Strand=Plus/Minus Query 101903 TTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTC 101962 || || |||| |||| || ||||| || ||||||||||| |||||| ||| || ||| Sbjct 205105 TTTGCTGAACGTCTTGTAGCGTTTGCCGCTGTTGAAGGAATATTCTTTTCTGGAGCTTTC 205046 Query 101963 GCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAG 102022 || || || || ||| | ||||| || || || |||| || | || | ||||| || Sbjct 205045 GCGTCAATCTTTTGGTTAAAGAAAAGAGGAATGATGCCAGGATTAACTTTTTCCAACGAA 204986 Query 102023 TTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGT 102082 | |||||| | || ||||| | ||| | || |||||||| | | || | | Sbjct 204985 CTAATTTCTCGAGATGAAGGATTGCATTGTGATTTTGCATGTCTCTTATTCA------CT 204932 Query 102083 TTTGTTGATACCCCATCAAGAGAAAGGATTCTTGAA---ATTGTCACTGAAGCCGTCCGA 102139 | || || | | | | | || | | | ||| ||| | | ||||| || | Sbjct 204931 CATCTTCATGCACGACCTCCAACAAAAACTGTAGAAGCTATTATAGCGGAAGCGGTTACA 204872 Query 102140 ATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAG 102199 || |||||||||||| | |||| | | || ||||| ||| | || |||||| || Sbjct 204871 ATAGAACAAGAATTTTTAACAGAAGCATTACCAGTTAATTTAATTGGTATGAACGCGAAT 204812 Query 102200 TTGATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGT 102243 || |||| | || ||||||||||| || |||| | |||| || Sbjct 204811 TTAATGAAAAAATATATTGAATTTGTAGCTGATAGATTATTAGT 204768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989441119841895