Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1915 356 3e-93 seq2 196 6e-45 seq904 114 2e-20 >seq1915 Length=14346 Score = 356 bits (394), Expect = 3e-93 Identities = 673/984 (68%), Gaps = 6/984 (1%) Strand=Plus/Plus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGA-CACATCAACG 63246 ||| || || || |||||||||| || | |||| |||| ||||| || || ||| Sbjct 10457 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACT 10516 Query 63247 ACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63305 | | | || | | |||| | | ||||||||| ||||| | || |||||| || | Sbjct 10517 CCAATTATCATT--TGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAA 10574 Query 63306 AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63365 |||| ||| | || | | ||| || ||||| ||||| ||||| | ||| | || | Sbjct 10575 AATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCA 10634 Query 63366 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63425 | ||| |||| |||||||| ||| || || || || | | || || |||||||||||| Sbjct 10635 AAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCT 10694 Query 63426 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63485 || ||||| | ||||||||||| ||||||||||| | ||||| |||||||| || ||| Sbjct 10695 CCTTGATCAACATATCTAGCGGTATTATTATAAACGCGTAACATAGGAATAATTCCATTT 10754 Query 63486 GATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGA 63545 || |||||| || || | ||||| ||| | |||||||| ||| ||| | | Sbjct 10755 GAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACA 10814 Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605 || || || ||||| | ||||| || | ||||||| ||| || || |||||||| || Sbjct 10815 CCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCC 10874 Query 63606 TCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGT 63664 ||||| |||||| |||| ||||| |||||||| || || | ||| | | || || Sbjct 10875 TCTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAGGTGT 10933 Query 63665 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63724 || |||||||| || || ||||| ||||| ||||| | ||||| || | |||||||| Sbjct 10934 GCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTA 10993 Query 63725 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63784 || |||||||| | || ||||| | ||||| || || || || ||||| | ||| Sbjct 10994 AGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCAT 11053 Query 63785 GTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63844 || || || | ||| ||| ||| |||| || | || ||| |||| | ||| Sbjct 11054 ATGTTGGGGACGCTCAGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAGT 11113 Query 63845 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTT 63904 |||||| |||||||| || ||| | | |||| || ||||| || ||||| || || Sbjct 11114 TTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAAGTTT 11173 Query 63905 ATCCTTATATTTGTTAACTATATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCC 63964 ||| || || | || |||| || | ||||| || | | ||||||| Sbjct 11174 TTCCGAATTGTTCATCACAATATTATAAGTTTTTTCAGAAATCATTGACGCGCGTTTCCC 11233 Query 63965 ATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGT 64024 |||| ||||| | ||| || | | ||| || | || | ||| | |||||| || Sbjct 11234 TGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTTTAGT 11293 Query 64025 TTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTG 64084 ||| || || ||||| || | || || | || || || | |||||| |||||||||| Sbjct 11294 TTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGATGTTT 11353 Query 64085 TGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCC 64144 || || | || || |||| || |||| | | || ||||| || || | || || Sbjct 11354 AGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTAACACC 11413 Query 64145 ATTATATATTCCTTGAATAACCTT 64168 | ||| | |||| ||| ||||| Sbjct 11414 TTGATAAACTCCTGAAATGACCTT 11437 Score = 109 bits (120), Expect = 7e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 62928 ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA 62987 ||||||||| |||||| | | |||| ||||| || || || |||| | || | Sbjct 10126 ACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGAA 10185 Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 |||| | ||||| || || | ||||||||| ||||| || || | ||||||||||||| Sbjct 10186 TATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATTA 10245 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63107 || ||||| | ||| || || || || |||| ||||| ||||| ||||| ||| Sbjct 10246 GATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGAT 10305 Query 63108 TCTATAATCGCTTTCCAGAC 63127 || | ||| ||| ||||||| Sbjct 10306 TCAAGAATTGCTGTCCAGAC 10325 Score = 104 bits (114), Expect = 3e-17 Identities = 234/353 (66%), Gaps = 12/353 (3%) Strand=Plus/Plus Query 62379 GGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATAC 62438 |||||||| | ||| ||||| |||| | || | || |||||| || || ||||| Sbjct 9421 GGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATAA 9480 Query 62439 GGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC 62498 ||||| | | |||||| ||||| ||||| | ||| |||||||| ||||| ||||| Sbjct 9481 GGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGCG 9540 Query 62499 ACCAATAAACTATTTCTAAGACCGTATGTTCTGAT--TTTATCTTTTAGATGTTCCCAAT 62556 | |||||| ||||| | ||| |||||||||| ||| | ||| | | ||||| Sbjct 9541 AGCAATAATGAATTTCGTACACC--ATGTTCTGATATTTTTTGTTTCAACAAATTCCAAT 9598 Query 62557 TCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTT----ACTG 62612 ||| | ||| | || ||||| ||||||| ||| || || || | Sbjct 9599 CCCATAAATCAGTAGGCTCAACATTCCACATATCGTATTGTAAAATGCCTTTGGAAACCG 9658 Query 62613 GCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCC 62672 | | ||||| ||| | ||||| || || || | | ||||| ||| || Sbjct 9659 GTG----ATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCT 9714 Query 62673 TCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGC 62725 ||||||||||| | ||| || || ||||| || | |||||| || || | ||| Sbjct 9715 TCTAATGCACCATGATACATTGTCTCAAATATTTGCTTATTCAGTTCCTTTGC 9767 >seq2 Length=211661 Score = 196 bits (216), Expect = 6e-45 Identities = 232/310 (75%), Gaps = 6/310 (2%) Strand=Plus/Plus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 || || | ||||| ||| ||||| || |||||||| ||||| || ||||| || Sbjct 205288 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 205347 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT 33962 ||||||||||| || |||||||| || || | ||| || ||||| ||| ||| ||||| Sbjct 205348 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 205407 Query 33963 GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 34022 ||||||||||||| || || ||||| ||||||||| || ||||| || || ||| Sbjct 205408 ACTAAATTTTCATTGACAATACCATCCGAGGCTGCAAAGAAGGCCAAAACGTGAGAAATA 205467 Query 34023 AAATATTTTTCGTC-TGGTGTTAGTTTA---TTCCAATCATTGATATCTTTAGATATATC 34078 || ||||||| || | || | |||||| | ||||||||| ||||| || || | || Sbjct 205468 AAGAATTTTTCTTCATCGT-TAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTC 205526 Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGT-CAT 34137 ||||| || || ||||||||||| || || |||||||| ||||| | |||||| | || Sbjct 205527 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGATCTACAC 205586 Query 34138 GATATTGGAT 34147 ||||| ||| Sbjct 205587 AATATTTGAT 205596 Score = 159 bits (176), Expect = 4e-34 Identities = 316/458 (69%), Gaps = 10/458 (2%) Strand=Plus/Plus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||||||||| |||||| || || || |||||||| || ||||| ||||| |||| Sbjct 204641 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 204700 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTA-AAtttttttAAATC 33396 || || ||||| |||||||| ||||| ||| || |||||| | | Sbjct 204701 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-- 204758 Query 33397 CCAATT--CAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCAT-TTCAC 33453 |||| | || ||| |||||||| || || ||||| |||||| ||||||| | ||| | Sbjct 204759 CCAAGTGCCACTAAT-AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGC 204817 Query 33454 AATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATA 33513 ||||| || || | |||||||| | || | || | |||||||||||| || | | Sbjct 204818 G-TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAA 204876 Query 33514 CCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAA-ATGTTTA 33572 |||| | | ||||||| | || |||| | ||| | || | || ||| | Sbjct 204877 CCGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCATGAAGATGAGTG 204935 Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 || | | |||||| ||||| || |||| || || |||| | ||||| |||||| ||| Sbjct 204936 AATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAA 204995 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || | ||| ||||| | || | || || | |||||| || || ||||| | ||| Sbjct 204996 AAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCA 205055 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAG 33730 |||||||| |||||||| || || ||||| || | ||| Sbjct 205056 GAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG 205093 >seq904 Length=34060 Score = 114 bits (126), Expect = 2e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 63612 CTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCA 63671 |||||||| |||| | | || ||| ||||| |||||||| | | | || || ||| Sbjct 10804 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 10863 Query 63672 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 63731 ||||| || || ||| || || ||||| |||| || || | || ||| || || ||| Sbjct 10864 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 10923 Query 63732 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 63791 ||||||| || ||||| | ||||||||| | | |||||||| |||||||| || Sbjct 10924 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 10983 Query 63792 GGTCTTTCAACAA 63804 ||||||||||||| Sbjct 10984 GGTCTTTCAACAA 10996 Score = 82.4 bits (90), Expect = 1e-10 Identities = 191/286 (67%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 62796 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 62855 |||||||||||||| ||| ||||||||||||||| ||||||||||| ||| || Sbjct 9687 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 9746 Query 62856 ATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA- 62914 | |||||| | ||| | | || ||||| | | || | || || | |||||||| Sbjct 9747 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 9806 Query 62915 ----TCGCCCATCTATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCT 62969 ||| |||| ||||| | |||| || || || | |||||| |||||| Sbjct 9807 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 9866 Query 62970 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTT 63029 || |||| | | | ||||| | || ||||| || | |||| || | ||||| Sbjct 9867 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 9926 Query 63030 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 63075 || | ||| | ||||||| |||| || || | ||| |||||| Sbjct 9927 CCAAGATTCTTTTGATTAGATTTTTCATTGCAAGAATC--TATAAA 9970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629728882318320