Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1915 230 2e-55 seq2 176 4e-39 seq904 100 3e-16 >seq1915 Length=14346 Score = 230 bits (254), Expect = 2e-55 Identities = 470/695 (68%), Gaps = 4/695 (1%) Strand=Plus/Plus Query 37941 AAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCA 38000 ||| |||| ||||| ||||| ||| || ||| ||| ||| | || | ||| Sbjct 10460 AAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACTCCA 10519 Query 38001 TTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAA 38060 | |||| | ||| || | || |||||| | ||| | ||||| | |||| |||||| Sbjct 10520 ATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAAAATAA 10579 Query 38061 ATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATAT 38120 ||| | | | |||||| || || ||| ||| |||| | |||||| || || Sbjct 10580 ATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCAAAAAT 10639 Query 38121 ATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTG 38180 |||| ||||| | ||||| |||||| | | || || || | ||| | ||||| || Sbjct 10640 GTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCTCCTTG 10699 Query 38181 ATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTT 38240 || || ||||||| | || |||||||| | | ||||||||| | || ||||| || | Sbjct 10700 ATCAACATATCTAGCGGTATTATTATAAACGCGTAACATAGGAATAATTCCATTTGAATA 10759 Query 38241 GCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTAT 38300 || ||| | || | ||||||| || | || || || ||| || || || || Sbjct 10760 ACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACACCAAT 10819 Query 38301 TCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTAT 38360 ||||||||| || || || | |||||| ||| || |||||| | || || ||||| Sbjct 10820 ACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCCTCTAT 10879 Query 38361 ACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGC 38420 ||||| || || | || | ||||||||| || | |||||| || || || || Sbjct 10880 TGAATCATCTTTCATAGTTAAAAGAAAACAACTCGAAAGTTGAGGTCTAGGTGTGCCAGC 10939 Query 38421 GTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTC 38480 ||||| || || |||||||| || | || | ||||| |||| ||| || ||||| Sbjct 10940 ATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTAAGTTTC 10999 Query 38481 TATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTG 38540 || || | || |||||| | |||||||| || | | ||| | ||| ||||||||||| Sbjct 11000 AATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCATATGTTG 11059 Query 38541 TGGTCTTTCTATTATTTTATTATTCTGTT--TAAGTAGATACGATTTTTCTAATGTTTTT 38598 || | || | | || | || || ||| ||||| ||| |||| | ||||| Sbjct 11060 GGGACGCTC-AGCAACTTTTCCACCTATTCGTAA-AAGATAAGATCTTTCAAGAGTTTTA 11117 Query 38599 ATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 | |||||||||| ||||| |||||||||||| || Sbjct 11118 AATCCAAAATAATTATATTTATAATCTCTATCATA 11152 Score = 123 bits (136), Expect = 2e-23 Identities = 233/338 (69%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 37129 GGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATAT 37188 || || |||| ||||| || |||| | || | || | || || ||||| ||||| Sbjct 9421 GGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATAA 9480 Query 37189 GGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCT 37248 ||||||| | |||||| | |||||||| || ||||||||||||||||||||||| Sbjct 9481 GGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGCG 9540 Query 37249 ATTAGAAGGCTATTTCTCAATCCATGTGTATTA-ATTCTCTTTTTTAGTTCATTCCAATC 37307 | | | ||||| | |||||| | | | ||| | | ||| | ||||||||| Sbjct 9541 AGCAATAATGAATTTCGTACACCATGT-TCTGATATTTTTTGTTTCAACAAATTCCAATC 9599 Query 37308 CCATAAATCTGTTGGGT--TCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCT 37365 ||||||||| || || | | || ||||||||| ||||||| ||| ||||| | Sbjct 9600 CCATAAATCAGTAGGCTCAACATT--CCACATATCGTATTGTAAAATGCCTTTGGAAACC 9657 Query 37366 GGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCT 37425 || || | | ||| | |||||| || ||| | ||| | |||||| || | |||| Sbjct 9658 GGTGATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCTTCT 9717 Query 37426 AGTGCGGCATAATATATTGTTTCGAAAATTTGTATATT 37463 | ||| ||| ||| ||||| || || ||||| |||| Sbjct 9718 AATGCACCATGATACATTGTCTCAAATATTTGCTTATT 9755 Score = 98.7 bits (108), Expect = 9e-16 Identities = 136/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 37708 TTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTC 37767 |||||||||||||||||||| | | | ||| | |||||||||||| | |||||| Sbjct 10156 TTACATACAGCAACTTCATCCGGGCTCGAATATTCAACAATCTCTGTACACAAATTACTA 10215 Query 37768 GATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGT 37827 || | ||||| || | ||| |||||| ||||| ||||||||||||||| || || Sbjct 10216 CATTTGATTGTACCAAGATTTTGTTGATTAGATTTACGATTACAAGAATCTTTGTAGAGC 10275 Query 37828 ATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT-TGC 37886 ||||| || || || ||| || || | || | ||| | | |||| | |||| || Sbjct 10276 ATATATGGTGTACCCGTTTCGATCTGGGATTCAAGAATTGCTGTCCA-GACTTTCTGAGC 10334 Query 37887 TTTAACGA 37894 |||||||| Sbjct 10335 TTTAACGA 10342 >seq2 Length=211661 Score = 176 bits (194), Expect = 4e-39 Identities = 307/441 (70%), Gaps = 8/441 (2%) Strand=Plus/Plus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 |||||||| || || ||| ||| || ||||| || ||||||| || || | Sbjct 204654 TTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTGTAAACTAATTAAA 204713 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 |||||||| ||||||||| | | ||| | | |||| | | ||| | | |||| Sbjct 204714 TCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCACCAAGTGCCACTAAT 204773 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||||||| || || ||||| ||||| | ||||||| |||||||| || | | Sbjct 204774 AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCGTTCATACCAATTAAA 204833 Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATC 11578 | || || | || |||| ||||| || | |||||| ||||||| || || || Sbjct 204834 TTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCGCTTCCGCTATAATA 204893 Query 11579 GACGTTATA-ACTTCCTTAGATGGTGGATGTA-ATAAA--TGTTTAAACATTAAACACGC 11634 | || || | || || | ||| || || || || || | || | | ||| || Sbjct 204894 GC--TTCTACAGTT--TTTGTTGGAGGTCGTGCATGAAGATGAGTGAATAAGAGACATGC 204949 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 |||||||||||| || ||||| |||| | |||||||| || ||||| |||||||| || Sbjct 204950 AAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAAAAGTTAATCCTGG 205009 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 ||||| ||||| ||| |||| |||||| || | || || | ||||||||||||||||| Sbjct 205010 CATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAGAAAAGAATATTCC 205069 Query 11755 CTCCACAGCTGCAAATGCTAC 11775 || ||||| ||||| ||||| Sbjct 205070 TTCAACAGCGGCAAACGCTAC 205090 Score = 134 bits (148), Expect = 1e-26 Identities = 190/264 (72%), Gaps = 5/264 (2%) Strand=Plus/Plus Query 11921 TACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCT 11980 |||||||||||||| |||||||| || || ||||||||||| ||||||| ||| ||| Sbjct 205318 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 205377 Query 11981 GAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTA 12040 | | || || || | ||| | |||| ||||||| ||||| ||||||||||| Sbjct 205378 GGAATTTGGACTTCATTACTAAAACGTTCCACTAAATTTTCATTGACAATACCATCCGAG 205437 Query 12041 GATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAA-TTTA-- 12097 | |||||| || || | | || |||||| ||||||| || | ||||| |||| Sbjct 205438 GCTGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTC-ATCGTTAAGTTTATA 205496 Query 12098 -TCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCAC 12156 |||||||||| | ||| || || | || ||||| ||||| |||||||| || | Sbjct 205497 CTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCTTC 205556 Query 12157 TGATTGTTTATACATTTTCCAGAT 12180 | | ||| ||||||| |||||| Sbjct 205557 GGCCTTTTTGTACATTTGCCAGAT 205580 >seq904 Length=34060 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 38362 CTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCG 38421 || ||||| || ||| | | || ||| || || |||||||| || ||| || || || Sbjct 10804 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 10863 Query 38422 TTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCT 38481 ||||| || || ||| |||||| | || |||| || |||| ||||||| ||||| Sbjct 10864 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 10923 Query 38482 ATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGT 38541 || | |||| |||||| || ||||| || | ||| || | ||| | ||| |||||| Sbjct 10924 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 10983 Query 38542 GGTCTTTC 38549 |||||||| Sbjct 10984 GGTCTTTC 10991 Score = 93.3 bits (102), Expect = 4e-14 Identities = 217/326 (67%), Gaps = 6/326 (2%) Strand=Plus/Plus Query 37135 ACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCA 37194 || || ||||| || ||| |||||| | |||| ||| |||||||| || ||||||||| Sbjct 9114 ACTACTTGAAATTCCCCACTTAATACACGTCTTTGATAAATATTGCTTGTGTATGGTTCA 9173 Query 37195 ATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGA 37254 | | | ||||| || | | || ||| ||||||||||| ||||| ||||| || | Sbjct 9174 AAGCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATCAAC 9233 Query 37255 AGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAA 37314 | ||||| | ||||| | | | || | | ||| | || ||| |||||| | Sbjct 9234 AAAGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCATCGA 9293 Query 37315 TCTGTTGG--GTTCT----TTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGA 37368 |||| || || || || ||||| || || || || ||||||||||| || Sbjct 9294 TCTGAAGGTTGTACTCCTGTTCCCCACAATTCGTAATGAAGGATACCTTTACTAATCGGG 9353 Query 37369 GAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGT 37428 ||| | | |||||| ||||| || | | ||| | ||| || ||||| || Sbjct 9354 GAACCCTCATATGTAGGGTAAGGACCATCTTTAGCAGCAATTTCACATGATGATTCAAGA 9413 Query 37429 GCGGCATAATATATTGTTTCGAAAAT 37454 | |||| ||||| ||||| ||||| Sbjct 9414 GATGCATGATATAAAGTTTCAAAAAT 9439 Score = 89.7 bits (98), Expect = 5e-13 Identities = 196/290 (68%), Gaps = 8/290 (3%) Strand=Plus/Plus Query 37546 GGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATT 37605 ||||||||| |||| ||| | | | |||| || ||||||||||| ||| || Sbjct 9687 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 9746 Query 37606 ATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAA-CTTGTCGAACATAAA 37664 | |||||||| ||| || | | | ||| | |||| | | || ||| ||| ||| Sbjct 9747 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATT-TCATGAAGCTTCAAGAAATCAAA 9805 Query 37665 ----TACGTTAT--TATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGC 37718 | || | | |||||||||||||| || ||||| || ||| |||||| || || Sbjct 9806 AGTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGC 9865 Query 37719 AACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGT 37778 |||||||| | || ||| | ||| || ||||| | |||| || | || || Sbjct 9866 TACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGT 9925 Query 37779 TCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTA 37828 || | ||| ||||||| ||||||| ||| ||||||||| || ||| || Sbjct 9926 ACCAAGATTCTTTTGATTAGATTTTTCATTGCAAGAATCTATAAATATTA 9975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468458802425360