Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1915 352 4e-92 seq2 190 3e-43 seq904 105 9e-18 >seq1915 Length=14346 Score = 352 bits (390), Expect = 4e-92 Identities = 676/988 (68%), Gaps = 14/988 (1%) Strand=Plus/Plus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA-CACATCAACG 66039 ||| || || || |||||||||| || |||||| |||| ||||| || || ||| Sbjct 10457 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACT 10516 Query 66040 ACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 66098 | | | || | | |||| | | ||||||||| ||||| | || |||||| || | Sbjct 10517 CCAATTATCATT--TGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAA 10574 Query 66099 AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 66158 |||||||| | | | | ||| || ||||| ||||| ||||| | ||| | || | Sbjct 10575 AATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCA 10634 Query 66159 ATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 66218 | ||| ||| |||||||| ||| || || || || | | || || |||||||||||| Sbjct 10635 AAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCT 10694 Query 66219 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 66278 || ||||| | ||||||||||| ||||||||||| | ||||| |||||||| ||||| Sbjct 10695 CCTTGATCAACATATCTAGCGGTATTATTATAAACGCGTAACATAGGAATAATTCCATTT 10754 Query 66279 GATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGA 66338 || |||||| || || | ||||| ||| | |||||||| ||| ||| | | Sbjct 10755 GAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACA 10814 Query 66339 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 66398 || || || ||||| | ||||| || | ||||||| ||| || ||||||||||| ||| Sbjct 10815 CCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCC 10874 Query 66399 TCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 66457 ||||| |||||| |||| ||||| |||||||| || || | ||| | | | || Sbjct 10875 TCTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAGGTGT 10933 Query 66458 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 66517 || |||||||| || || ||||| ||||| ||||| | ||||| || | |||||||| Sbjct 10934 GCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTA 10993 Query 66518 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 66577 || |||||||| | || ||||| | ||||| || || || || ||||| | ||| Sbjct 10994 AGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCAT 11053 Query 66578 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 66637 || || || | ||| | | || |||| || | || ||| |||| | ||| Sbjct 11054 ATGTTGGGGACGCTCAGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAGT 11113 Query 66638 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 66697 |||||| |||||||| || ||| | | |||| || ||||| || || || ||||| Sbjct 11114 TTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAAGTTT 11173 Query 66698 ATCCTTATATTTGTTAACTACATCCATGGTAATACTT----GAAATAATCGGAGAATGTT 66753 ||| | ||||| | ||| || ||| || ||||| || | | ||| Sbjct 11174 TTCC---GAATTGTTCATCACA-ATATTATAAGTTTTTTCAGAAATCATTGACGCGCGTT 11229 Query 66754 TCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 66813 |||| |||| ||||| | ||| || | | ||| || | || | ||| | ||||| Sbjct 11230 TCCCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTT 11289 Query 66814 ttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGAT 66873 | |||||||| || ||||| || || || || | ||| || | | |||||| ||||||| Sbjct 11290 TAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGAT 11349 Query 66874 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 66933 ||| || || | || || |||| || |||| | | || ||||| || || | | Sbjct 11350 GTTTAGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTAA 11409 Query 66934 CTCCATTATATATTCCTTGGATAACCTT 66961 | || | ||| | |||| || ||||| Sbjct 11410 CACCTTGATAAACTCCTGAAATGACCTT 11437 Score = 109 bits (120), Expect = 7e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 65721 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 65780 ||||||||| |||||| | | |||| ||||| || || || |||| | || | Sbjct 10126 ACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGAA 10185 Query 65781 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 65840 |||| | ||||| || || | ||||||||| ||||| || || | ||||||||||||| Sbjct 10186 TATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATTA 10245 Query 65841 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 65900 || ||||| | ||| || || || || |||| ||||| ||||| ||||| ||| Sbjct 10246 GATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGAT 10305 Query 65901 TCTATAATCGCTTTCCAGAC 65920 || | ||| ||| ||||||| Sbjct 10306 TCAAGAATTGCTGTCCAGAC 10325 >seq2 Length=211661 Score = 190 bits (210), Expect = 3e-43 Identities = 323/458 (71%), Gaps = 10/458 (2%) Strand=Plus/Plus Query 35854 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 35913 ||||||||| |||||| || || || |||||||| || ||||| |||||||||| Sbjct 204641 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 204700 Query 35914 TAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATA-AAtttttttAAATC 35972 ||| || ||||| ||||| || ||||| |||||| |||||| | | Sbjct 204701 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-- 204758 Query 35973 CCAATT--CAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCAT-TTCAC 36029 |||| | || ||| |||||||| || |||||||| |||||| ||||||| | ||| | Sbjct 204759 CCAAGTGCCACTAAT-AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGC 204817 Query 36030 AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA 36089 ||||| || || | |||||||| | || | || | |||||||||||| || | | Sbjct 204818 G-TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAA 204876 Query 36090 CCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAA-ATGTTTA 36148 |||| || | |||||||| | ||| |||| | ||| | | || || ||| | Sbjct 204877 CCGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCATGAAGATGAGTG 204935 Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 || | | |||||| ||||| || || | || || |||| | ||||| |||||||||| Sbjct 204936 AATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAA 204995 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || || | ||| ||||| | || | || || | |||||| || ||||| || | |||| Sbjct 204996 AAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCA 205055 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAG 36306 |||||||| |||||||| || || ||||| || | ||| Sbjct 205056 GAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG 205093 Score = 179 bits (198), Expect = 5e-40 Identities = 218/294 (74%), Gaps = 5/294 (2%) Strand=Plus/Plus Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478 || || | ||| | ||||||||| || |||||||| ||||| || ||||| || Sbjct 205288 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 205347 Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 36538 || |||||||| || |||||||| || || | ||| || ||||| ||| ||| ||||| Sbjct 205348 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 205407 Query 36539 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 36598 ||||||||||||| || || || || ||||||||| || ||||| || || ||| Sbjct 205408 ACTAAATTTTCATTGACAATACCATCCGAGGCTGCAAAGAAGGCCAAAACGTGAGAAATA 205467 Query 36599 AAATATTTTTCGT-TTGGTGTTAGTTTA---TTCCAATCATTGATATCTTTAGATATATC 36654 || ||||||| | | || | |||||| | ||||||||| ||||| || || | || Sbjct 205468 AAGAATTTTTCTTCATCGT-TAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTC 205526 Query 36655 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 36708 ||||| || || ||||||||||| || || |||||||| ||||| | |||||| Sbjct 205527 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGAT 205580 >seq904 Length=34060 Score = 105 bits (116), Expect = 9e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 66405 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 66464 |||||||| |||| | | || ||| ||||| |||||||| | | || || ||| Sbjct 10804 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 10863 Query 66465 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 66524 ||||| || || ||| || || ||||| |||| || || | || ||| || || ||| Sbjct 10864 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 10923 Query 66525 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 66584 ||||||| || ||||| | ||||||||| | | |||||||| |||||||| || Sbjct 10924 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 10983 Query 66585 GGTCTTTCAAC 66595 ||||||||||| Sbjct 10984 GGTCTTTCAAC 10994 Score = 86.0 bits (94), Expect = 8e-12 Identities = 192/286 (67%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 65589 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 65648 |||||||||||||| ||| ||||||||||||||| ||||||||||| ||| || Sbjct 9687 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 9746 Query 65649 ATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA- 65707 | |||||| | ||| | | || ||||| | | || | || || | |||||||| Sbjct 9747 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 9806 Query 65708 ----TCGCTCATCTATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCT 65762 ||| | |||| ||||| | |||| || || || | ||||||||||||| Sbjct 9807 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 9866 Query 65763 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTT 65822 || |||| | | | ||||| | || ||||| || | |||| || | || || Sbjct 9867 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 9926 Query 65823 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 65868 || | ||| | ||||||| |||| || || | ||| |||||| Sbjct 9927 CCAAGATTCTTTTGATTAGATTTTTCATTGCAAGAATC--TATAAA 9970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658080088133960