Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2177 129 6e-25 seq1319 107 2e-18 seq157 104 2e-17 seq188 91.5 1e-13 seq1895 84.2 2e-11 >seq2177 Length=17275 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 |||| |||| || ||||||||||||||||||||||| | || | |||||| Sbjct 3953 ACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAGAGGGTACGGCCGTCTTCA 3894 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 || ||||| ||||| | || ||||||||||| || || || || ||||||||||| || Sbjct 3893 AGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTC-TTG 3835 Query 139676 ATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | |||||| |||| | || || | ||||||| | || || |||| ||| | ||||| Sbjct 3834 AATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTT 3775 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||||| ||||| |||||||| Sbjct 3774 TCCGGTAAGGGTTTTAACGAAGATTTGCAT 3745 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || || | ||| | || | ||||| || || |||||||| ||||||||||| Sbjct 4658 TGACCACCACGGAGACGGAGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCC 4599 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || | ||||| | || |||||||| | |||| |||||||||||| ||| Sbjct 4598 GAAAGAGTACGACCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGA 4539 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || || ||||| || ||| |||| ||||| | ||| || | || || | | || Sbjct 4538 GGGATACCCTCTTTATC-TTGAATTTTGGTTTTAACCTGATCAATGGTATCAGATGATTC 4480 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||| ||| | |||||| || || | |||||||| || ||||||||| Sbjct 4479 GACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTACAAAAATTTGCATA 4428 Score = 100 bits (110), Expect = 3e-16 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | |||| || || ||||||||||| || || ||| Sbjct 4199 CCACCACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAA 4140 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || || || ||||||||||| | || ||||||||||| || || || Sbjct 4139 AGGGTTCGTCCA-TCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGG 4081 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || || || ||| |||| | ||||| || || | || || | || ||| | Sbjct 4080 GATACCCTCCTTATC-TTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTA 4022 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 | || | ||| | || |||||||| | ||| |||||||| ||||||||| || Sbjct 4021 CGTCCAAGGTGATGGTTTTGCCGGTGAGCGTCTTTACGAAGATTTGCATACCT 3969 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || || |||| || |||||||||||||| || || || Sbjct 4427 CCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAA 4368 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || || || |||||||| || | || |||||||||||||| || || Sbjct 4367 AGGGTTCGTCCA-TCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGG 4309 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| ||| ||||| || || | || |||| | ||| || Sbjct 4308 AATACCTTCTTTGTCTTGGATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAAC 4249 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || || | ||||| || || ||||||||| Sbjct 4248 TTCCAAAGTAATGGTTTTTCCAGTGAGAGTTTTAACAAAAATTTGCATA 4200 >seq1319 Length=24104 Score = 107 bits (118), Expect = 2e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| | || | || | || ||||||||||| || || ||||| | Sbjct 16834 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCTTTTTGGATATTGTAATCTGAC 16775 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| | |||||||| ||| |||||| ||||||||||| || || Sbjct 16774 AAGGTACGTCCA-TCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGG 16716 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||||||||| ||| | || | |||| | || || | || || | || ||| | Sbjct 16715 AATGCCTTCTTTGTC-TTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTA 16657 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | |||| || | || || ||||| | || || ||||| ||||||||| Sbjct 16656 CTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCATA 16607 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| | ||||| || ||||||||||| || ||||| ||| | Sbjct 16606 CCACCTCTAAGACGGAGAACAAGGTGAAGAGTTGACTCTTTTTGGATATTATAGTCGGAC 16547 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| |||||||||||||| |||||| ||||||||||| ||||| Sbjct 16546 AAAGTACGTCCA-TCTTCCAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGG 16488 Query 139657 TATGCCT 139663 || ||| Sbjct 16487 AATACCT 16481 >seq157 Length=142614 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| ||||||||||| |||||||| | || | ||||| | ||||||||| Sbjct 37599 GTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGACCATCTTCCAATTGTTTACCA 37540 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| ||||||||||| ||||| || ||||| || || ||| | |||| ||| Sbjct 37539 GCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATC-TTGAATCTTTGCTTT 37481 Query 139688 AGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || || | || || | || ||| || |||| ||| | || || ||||| | || Sbjct 37480 AACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGT 37421 Query 139747 TTTTACGAATATTTGCATA 139765 || ||||| ||||||||| Sbjct 37420 CTTGACGAAAATTTGCATA 37402 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| | || | || | || || ||||||||||| |||||||| | Sbjct 36717 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 36658 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | ||||||||||| |||| | ||||| ||||| ||||| Sbjct 36657 AAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGA 36598 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCT-GTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| | |||| |||| || | || | || || ||| ||| || Sbjct 36597 ATTCCTTCCTTATCT-TGAATCTTTGCTTTAACTTGATCAATGGTATCATTGGACTCGAC 36539 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | || || || || | || || ||||||||||||||| Sbjct 36538 TTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCATA 36490 >seq188 Length=104369 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || |||||||| | || ||||| | || || ||||||||||| || |||||| Sbjct 83290 GCCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGA 83231 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | || | || | ||||| | ||||||||||||| | || | |||||| ||||| || | Sbjct 83230 AAGTGAACGTCCA-TCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGG 83172 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || |||||||| || ||||||| ||| | | || | || ||| | || | Sbjct 83171 GGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAA 83112 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | || || || || | ||||| || || |||||||| Sbjct 83111 CTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCAT 83063 >seq1895 Length=14547 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| || |||||||||||| |||||| ||||||||||| ||||| |||||||||| Sbjct 4177 TCTTCCAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATTTGGAGGAGTGCCTTCTTTA 4118 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| | | ||| | | || ||||| || | || || || |||| || | Sbjct 4117 TCTTGAATTATGTTTTTCACTTCTTTAACTGTATCAGAGGCATCAACTTCAATGGCAATT 4058 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || ||||| | | ||||| || || ||||| ||| Sbjct 4057 GTTTTGCCACTTACAGTTTTAACAAAAATTTGTATA 4022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495994123184800