Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2 257 2e-63 >seq2 Length=211661 Score = 257 bits (284), Expect = 2e-63 Identities = 374/527 (71%), Gaps = 6/527 (1%) Strand=Plus/Plus Query 13558 CTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAG 13617 || ||||| ||||| || ||||||||| || || | |||||||||||| || | Sbjct 204631 CTCTGTTACTCATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTG 204690 Query 13618 TTTTACCTTCCAGTGATATATTT---TCCATAAAATCAAATGGATTTATTGACATAAACA 13674 ||||||||| || | || || |||||||||||||| ||||| ||| || ||| Sbjct 204691 TTTTACCTT---GTAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACA 204747 Query 13675 CTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACA 13734 ||| | | ||| ||| | | || |||||||||||| | ||| |||||||||| || Sbjct 204748 ATTTTGCTCCACCAAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCA 204807 Query 13735 TTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTT 13794 |||||| |||||||| |||| || || || | | | ||||||||||||| || Sbjct 204808 TTAAATTCGCGTTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTT 204867 Query 13795 CTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTA 13854 |||| | || || || ||||||| | | | | | | | ||| | | | Sbjct 204868 CTATTGTAACCGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCGTGCATGAA 204927 Query 13855 GATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTT 13914 |||| | || | | ||| |||||||||||||| | || ||||||| | ||| |||| Sbjct 204928 GATGAGTGAATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTT 204987 Query 13915 CGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAA 13974 |||| ||||| |||||||||||||||| ||||| ||| ||||||||||| |||| || | Sbjct 204988 CGTTGGAAAAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGA 205047 Query 13975 ATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACG 14034 | | || |||||||||||||| ||||| || |||||||||| | ||||| |||| | Sbjct 205048 AAGCTCCAGAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTCAGCAAATG 205107 Query 14035 ATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttttttt 14081 | | || || | || |||||| |||||| || | ||||||| Sbjct 205108 AAGATTCCTTATCGGAAATCCATCGAAGAGCCCAATCCGCTTTTTTT 205154 Score = 143 bits (158), Expect = 3e-29 Identities = 192/264 (73%), Gaps = 5/264 (2%) Strand=Plus/Plus Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC 14225 |||||||| || || || ||||| || |||||||| |||||||| ||||| ||||| Sbjct 205318 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 205377 Query 14226 GACCATTGTACTTCCG-AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14284 | ||| ||||| | ||||| | ||| | ||||||||||| || |||||||| Sbjct 205378 GGAATTTGGACTTCATTACTAAAA-CGTTCCACTAAATTTTCATTGACAATACCATCCGA 205436 Query 14285 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT--- 14341 |||||||| || ||||| | || ||||||| ||| ||||||| ||| ||||| Sbjct 205437 GGCTGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTCATCGTTAAGTTTATA 205496 Query 14342 TTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGAC 14401 | |||||| | |||||| ||||| || ||||| ||||| |||||||| ||| | Sbjct 205497 CTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCTTC 205556 Query 14402 AGCTTTTTTATACATTACCCATAT 14425 || ||||| |||||| ||| || Sbjct 205557 GGCCTTTTTGTACATTTGCCAGAT 205580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479660424314600