Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2 268 9e-67 >seq2 Length=211661 Score = 268 bits (296), Expect = 9e-67 Identities = 381/530 (72%), Gaps = 12/530 (2%) Strand=Plus/Plus Query 13346 CTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAG 13405 || ||||| ||||| || ||||||||| || || | ||||||||| || || | Sbjct 204631 CTCTGTTACTCATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTG 204690 Query 13406 TTTTACCTTCCAGTGATATATTT---TCCATAAAATCGAATGGATTTGTTGACATAAACA 13462 ||||||||| || | || || ||||||||||| || ||||| ||| || ||| Sbjct 204691 TTTTACCTT---GTAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACA 204747 Query 13463 CTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACA 13522 ||| | | ||| ||| | | ||||||||||||||| | ||| |||||||||| || Sbjct 204748 ATTTTGCTCCACCAAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCA 204807 Query 13523 TTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTT 13582 |||||| |||||||| |||| || || || | | | ||||||||||||| || Sbjct 204808 TTAAATTCGCGTTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTT 204867 Query 13583 CTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATAT---T 13639 |||| | || || || ||||||| ||| || || || | ||||| | | Sbjct 204868 CTATTGTAACCGCTTCCGCTATAATAG-CTTC-TACAGTTTTT-GTTGGAGGTCGTGCAT 204924 Query 13640 TTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAA 13699 ||||| | || | | ||| |||||||||||||| | || ||||||| | ||| | Sbjct 204925 GAAGATGAGTGAATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTA 204984 Query 13700 GTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAG 13759 ||||||| ||||| |||||||||||||||| ||||| ||| ||||||||||| |||| | Sbjct 204985 GTTCGTTGGAAAAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACG 205044 Query 13760 CGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAA 13819 |||| | ||| |||||||||||||| ||||| || |||||||||| || ||||| ||| Sbjct 205045 CGAAAGCTCCAGAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTCAGCAA 205104 Query 13820 ACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAttttttt 13869 | || | || || | || |||||| |||||| || | ||||||| Sbjct 205105 ATGAAGATTCCTTATCGGAAATCCATCGAAGAGCCCAATCCGCTTTTTTT 205154 Score = 147 bits (162), Expect = 2e-30 Identities = 193/264 (73%), Gaps = 5/264 (2%) Strand=Plus/Plus Query 13954 TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCT 14013 |||||||| || || || ||||| || |||||||| |||||||||||||| |||||| Sbjct 205318 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 205377 Query 14014 GACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACT 14072 | ||| || || | ||||| | ||| | || |||||||| ||||||||||| Sbjct 205378 GGAATTTGGACTTCATTACTAAAA-CGTTCCACTAAATTTTCATTGACAATACCATCCGA 205436 Query 14073 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT--- 14129 |||||||| || ||||| | || ||||||| ||| ||||||| ||| ||||| Sbjct 205437 GGCTGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTCATCGTTAAGTTTATA 205496 Query 14130 TTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGAC 14189 | |||||| | |||||| ||||| || ||||| ||||| |||||||| ||| | Sbjct 205497 CTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCTTC 205556 Query 14190 AGCTTTTTTATACATTACCCATAT 14213 || ||||| |||||| ||| || Sbjct 205557 GGCCTTTTTGTACATTTGCCAGAT 205580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478521384785160