Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1319 127 2e-24 seq34 113 3e-20 seq2177 104 2e-17 seq188 102 6e-17 seq157 82.4 6e-11 >seq1319 Length=24104 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||| | ||||| ||| ||| ||||| | ||||||||| ||||| |||||| | || || Sbjct 16817 CACGAGATGGAGAGTTGACTCTTTTTGGATATTGTAATCTGACAAGGTACGTCCATCTTC 16758 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 ||||||||| |||||||| ||||| || || ||||| | || | |||||||| || Sbjct 16757 CAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCTTG 16698 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 ||| | |||| ||| | ||| || || | ||| || || | || |||||||| Sbjct 16697 AATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTTTT 16638 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| ||||| || || ||||||||||| Sbjct 16637 ACCGGTAAGAGTCTTAACGAAAATTTGCAT 16608 >seq34 Length=176868 Score = 113 bits (124), Expect = 3e-20 Identities = 162/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| ||||| | | | ||| | |||| ||| || || | || ||||| ||| Sbjct 50734 CCTCCACGTAGTCTAAGTATAAGATGAAATGTGCACTCTTTGTGGATATGATAATCTGAC 50793 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| |||| || |||||| |||| |||||||| | || |||||||| | || Sbjct 50794 AAGGTACGTCCGTCTTCTAATTGTATGCCAGCAAAAATAAGGCGTTGTTGATCAGGAGGA 50853 Query 43003 ACACCTTCTTTTTCGCTGATCA-ACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || | ||| ||| ||| | | || ||| ||| || | | || Sbjct 50854 ATTCCTTCTTTGTCATTAATCTTACT-TTTAAGTTTGTCAATTGTATCACTCGAAGTCAC 50912 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGC 43107 || | ||||| |||||||| ||||| ||||||||||| || ||| Sbjct 50913 CTCCAATGTTATTGTTTTTCCAGTTAGTGTTTTCACAAATATCTGC 50958 >seq2177 Length=17275 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||| | || ||| ||||| | |||||| || || Sbjct 4427 CCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAA 4368 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| | || || | |||||| ||||| ||||| | || || ||||| | || Sbjct 4367 AGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGA 4308 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || |||| |||| ||| | | || ||| || ||| || Sbjct 4307 ATACCTTCTTTGTCTTGGATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACT 4248 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| || |||||||| |||||||||||||| Sbjct 4247 TCCAAAGTAATGGTTTTTCCAGTGAGAGTTTTAACAAAAATTTGCAT 4201 >seq188 Length=104369 Score = 102 bits (112), Expect = 6e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | |||||||||||| | || |||| | || || || ||||| || ||||| Sbjct 83253 TCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAAT 83194 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || || || |||||||| | || | |||||||| || || ||||||||| | Sbjct 83193 ATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTA 83134 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | || |||| | || || |||| || || ||||| || || || ||||| ||| Sbjct 83133 TCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACA 83074 Query 43099 AAAATTTGCATTTT 43112 ||||||||||| || Sbjct 83073 AAAATTTGCATGTT 83060 >seq157 Length=142614 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 42906 ATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTG 42965 ||||| ||| |||||||| | ||| || || || || ||||| | || |||||||| Sbjct 37378 ATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCCAATTG 37319 Query 42966 TTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAA 43025 ||| ||||| || ||||| || |||||||| | || | |||||| || || ||| Sbjct 37318 TTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGAATCTT 37259 Query 43026 CTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGT 43085 |||| ||| | | || || | |||||| || | || || ||||| ||||| Sbjct 37258 TGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGT 37199 Query 43086 TAGAGTTTTCACAAAAATTT 43105 || || || || ||||||| Sbjct 37198 GAGGGTCTTGACGAAAATTT 37179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381317222341602