Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1915 365 6e-96 seq2 181 1e-40 seq904 102 1e-16 >seq1915 Length=14346 Score = 365 bits (404), Expect = 6e-96 Identities = 678/988 (69%), Gaps = 14/988 (1%) Strand=Plus/Plus Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 ||| || || || |||||| ||| ||| |||||| |||| |||| || ||| | Sbjct 10457 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGAT-CA--AATAA 10513 Query 72003 CCACTCTCCATCATCATTT------ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 72056 |||| | || ||||||| || | ||||||||| ||||| | || |||||| || Sbjct 10514 --ACTC-CAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGC 10570 Query 72057 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 72116 ||||| ||| | | | | || || ||||| ||||| ||||| | ||| | || Sbjct 10571 ATAAAATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAA 10630 Query 72117 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176 | | ||| |||| |||||||| ||| || || || || | | ||||| |||||||| Sbjct 10631 ATCAAAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTT 10690 Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | ||||||||||| ||||||||||| | ||||| |||||||| || Sbjct 10691 TCCTCCTTGATCAACATATCTAGCGGTATTATTATAAACGCGTAACATAGGAATAATTCC 10750 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| || |||||| || || | ||||| ||| | |||||||| || ||| Sbjct 10751 ATTTGAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTT 10810 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| || || ||||| | ||||| || | ||||||| ||| || ||||||||||| Sbjct 10811 CACACCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGAT 10870 Query 72357 GCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 72415 |||||||| |||||| |||| ||||| |||||||| || || | ||| | | | Sbjct 10871 TCCCTCTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAG 10929 Query 72416 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 72475 || || |||||||| || || ||||| ||||| ||||| | ||||| |||| |||| Sbjct 10930 GTGTGCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGAT 10989 Query 72476 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTA 72535 |||| || |||||||| | ||| ||||| | || || || ||||| || ||||| | Sbjct 10990 TGTAAGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAA 11049 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 |||||| || || | ||| | | || | |||| || | || ||| |||| | Sbjct 11050 GCATATGTTGGGGACGCTCAGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAA 11109 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGA 72655 ||||||||| |||||||| || ||| | | |||| || ||||| || ||||| | Sbjct 11110 GAGTTTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAA 11169 Query 72656 GTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTT 72715 |||| ||| || || | || |||| || | ||||| || | | ||| Sbjct 11170 GTTTTTCCGAATTGTTCATCACAATATTATAAGTTTTTTCAGAAATCATTGACGCGCGTT 11229 Query 72716 TCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 72775 |||| |||| ||||| | ||| || | | ||| || | || | ||| | ||||| Sbjct 11230 TCCCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTT 11289 Query 72776 ttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGAT 72835 | ||||| || || ||||| || || || || | || || || | |||||| || |||| Sbjct 11290 TAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGAT 11349 Query 72836 GTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 72895 ||| || || | || || ||||||| |||| | | || ||||| || || | | Sbjct 11350 GTTTAGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTAA 11409 Query 72896 CTCCATTATATATTCCTTGGATAACCTT 72923 | || | ||| | |||| || ||||| Sbjct 11410 CACCTTGATAAACTCCTGAAATGACCTT 11437 Score = 95.1 bits (104), Expect = 2e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 71683 ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA 71742 ||||||| | ||| || | | |||| ||||| || || || |||| | | | Sbjct 10126 ACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGAA 10185 Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 |||| | ||| || || || | ||||||||| ||||| || || | ||||||||||||| Sbjct 10186 TATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATTA 10245 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 || ||||| | ||| || || || ||| | || ||||| ||||| ||||| ||| Sbjct 10246 GATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGAT 10305 Query 71863 TCTATAATCGCTTTCCAGAC 71882 || | ||| ||| ||||||| Sbjct 10306 TCAAGAATTGCTGTCCAGAC 10325 >seq2 Length=211661 Score = 181 bits (200), Expect = 1e-40 Identities = 321/458 (70%), Gaps = 10/458 (2%) Strand=Plus/Plus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 ||||||||| |||||| || || || |||||||| || ||||| || || |||| Sbjct 204641 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 204700 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATA-AAtttttttAAATC 41879 || || ||||| |||||||| ||||| |||||| |||||| | | Sbjct 204701 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-- 204758 Query 41880 CCAATT--CAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCAT-TTCAC 41936 |||| | || ||| |||||||| || | ||||| |||||| ||||||| | ||| | Sbjct 204759 CCAAGTGCCACTAAT-AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGC 204817 Query 41937 AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA 41996 ||||| || || | |||||||| | || | || | |||||||||||| || | | Sbjct 204818 G-TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAA 204876 Query 41997 CCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAA-ATGTTTA 42055 |||| || | |||||||| | ||| |||| | ||| | | || || ||| | Sbjct 204877 CCGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCATGAAGATGAGTG 204935 Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 || | | |||||| ||||| || |||| || ||||||| | ||||| |||||||||| Sbjct 204936 AATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAA 204995 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || | ||| ||||| | || | || || | |||||| || ||||| || | |||| Sbjct 204996 AAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCA 205055 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAG 42213 |||||||| |||||||| || || ||||| || | ||| Sbjct 205056 GAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG 205093 Score = 179 bits (198), Expect = 5e-40 Identities = 218/294 (74%), Gaps = 5/294 (2%) Strand=Plus/Plus Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 || || | ||| | ||| ||||| || |||||||||||||| || ||||| || Sbjct 205288 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 205347 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA 42445 ||||||||||| || |||||||| || || | || || ||||| ||| ||| ||||| Sbjct 205348 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 205407 Query 42446 GCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 42505 |||||||||| || || || || || ||||||||| || ||||| || || ||| Sbjct 205408 ACTAAATTTTCATTGACAATACCATCCGAGGCTGCAAAGAAGGCCAAAACGTGAGAAATA 205467 Query 42506 AAATATTTTTCGTCCGGTGTTAA-TTTA---TTCCAATCATTGATATCTTTAGATATATC 42561 || ||||||| | | ||||| |||| | ||||||||| ||||| || || | || Sbjct 205468 AAGAATTTTTC-TTCATCGTTAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTC 205526 Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGAT 42615 ||||| || || ||||||||||| ||||| |||||||| ||||| | |||||| Sbjct 205527 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGAT 205580 >seq904 Length=34060 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 72367 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 72426 |||||||| |||| | | || ||| ||||| |||||||| | | || || ||| Sbjct 10804 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 10863 Query 72427 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCA 72486 ||||| || || ||| || || ||||| |||| || |||| || ||| || || ||| Sbjct 10864 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 10923 Query 72487 ATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGA 72546 ||||||| || ||||| | ||| ||||| | | |||||||| ||||| || || Sbjct 10924 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 10983 Query 72547 GGTCTTTCAAC 72557 ||||||||||| Sbjct 10984 GGTCTTTCAAC 10994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671044661654440