Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2177 122 9e-23 seq1319 122 9e-23 seq188 109 6e-19 seq157 96.9 4e-15 seq1895 87.8 2e-12 >seq2177 Length=17275 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || | |||| ||||| || || |||||||| ||||| ||||| Sbjct 3971 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAG 3912 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| |||||||| ||||| | || ||||||||||| || || || Sbjct 3911 AGGGTACGGCCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 3852 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||||| ||| | || || | ||||| | | ||| ||| Sbjct 3851 ATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACT 3792 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||| ||||| | ||||| ||||| |||||||| Sbjct 3791 TCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 3745 Score = 109 bits (120), Expect = 6e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| | ||||| || ||||||||||| || ||||| ||| Sbjct 4199 CCACCACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAA 4140 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | || || |||||||||||||| | || ||||||||||| || || || Sbjct 4139 AGGGTTCGTCCA-TCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGG 4081 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || || || |||||| ||||| || || | || |||| || ||||| Sbjct 4080 GATACCCTCCTTATCTTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTAC 4021 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | || | || |||||||| | || |||||||| ||||||||| || Sbjct 4020 GTCCAAGGTGATGGTTTTGCCGGTGAGCGTCTTTACGAAGATTTGCATACCT 3969 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || ||||||||||| ||||| ||||| | || | ||||| | ||| Sbjct 4631 TGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGC 4572 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 |||||||| | |||| |||||||||||| ||||| || || ||||| || |||||| Sbjct 4571 TTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGAATTTTG 4512 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||| | ||| || | || || | | ||| || |||| || | |||||| || || Sbjct 4511 GTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTA 4452 Query 143162 AATGTTTTTACGAATATTTGCATA 143185 | ||||||||| || ||||||||| Sbjct 4451 AGTGTTTTTACAAAAATTTGCATA 4428 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||||| ||| || |||||||| || ||||| || Sbjct 4427 CCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAA 4368 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | || || ||||||||||| || | || |||||||||||||| || || Sbjct 4367 AGGGTTCGTCCA-TCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGG 4309 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| || ||| ||||| || || | || || | | || || Sbjct 4308 AATACCTTCTTTGTCTTGGATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAAC 4249 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | ||| | || || || || | ||||| || || ||||||||| Sbjct 4248 TTCCAAAGTAATGGTTTTTCCAGTGAGAGTTTTAACAAAAATTTGCATA 4200 >seq1319 Length=24104 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| |||||| | || | ||| | || || |||||||| || |||||||| | Sbjct 16834 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCTTTTTGGATATTGTAATCTGAC 16775 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| | ||||||||| ||| |||||| ||||||||||| || || Sbjct 16774 AAGGTACGTCCA-TCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGG 16716 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||||||||| ||| || ||| | || || | || || | || ||||| Sbjct 16715 AATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTAC 16656 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| ||| | || || ||||| | || || ||||| ||||||||| Sbjct 16655 TTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCATA 16607 >seq188 Length=104369 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || |||||||| | || || || | ||| ||||||||||| || ||||||||| Sbjct 83290 GCCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGA 83231 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | || | || | ||||| | |||||||||||| | || | |||||| ||||| || | Sbjct 83230 AAGTGAACGTCCA-TCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGG 83172 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || |||||||| || |||||||| ||| | | || | || || | ||| | Sbjct 83171 GGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAA 83112 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| | ||| | || || || || | |||||| || || |||||||| Sbjct 83111 CTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCAT 83063 >seq157 Length=142614 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| |||||| | || | ||| | || ||||||||||| || || ||||| | Sbjct 36717 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 36658 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | |||||||||||| |||| | ||||| ||||| ||||| Sbjct 36657 AAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGA 36598 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| ||| ||| | || || | || || ||| || ||| Sbjct 36597 ATTCCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCAATGGTATCATTGGACTCGACT 36538 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | || || || || | || || ||||||||||||||| Sbjct 36537 TCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCATA 36490 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || || || | ||| | || | ||| | |||||||||||||| || || ||||| Sbjct 37632 TGACCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCC 37573 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | || | ||||| | |||||||||||| |||||| ||||||||||| ||| Sbjct 37572 GATAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGA 37513 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || ||||| || || ||| ||| ||| | || || | || || | || || Sbjct 37512 GGAATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCA 37453 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||||| || | || || ||||| | || || ||||| ||||||||| Sbjct 37452 ACTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCATA 37402 >seq1895 Length=14547 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| ||||||||||||||| |||||| ||||||||||| ||||| |||||||||| Sbjct 4177 TCTTCCAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATTTGGAGGAGTGCCTTCTTTA 4118 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || |||| | | ||| | | || || || || | || || ||||||| | | Sbjct 4117 TCTTGAATTATGTTTTTCACTTCTTTAACTGTATCAGAGGCATCAACTTCAATGGCAATT 4058 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || ||||| | | ||||| || || ||||| ||| Sbjct 4057 GTTTTGCCACTTACAGTTTTAACAAAAATTTGTATA 4022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506942980684080