Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq206 86.0 9e-12 >seq206 Length=70616 Score = 86.0 bits (94), Expect = 9e-12 Identities = 172/253 (68%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 70340 GGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCAC 70399 || || |||||||| |||||||||||||||||| |||| || || || ||||||||||| Sbjct 45508 GGACTTGGTGTACCATTTAACATTGCAAGCTATGCTATATTAACTCATATGATTGCTCAT 45567 Query 70400 ATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTA 70459 | || || | | || || | || ||||| || || |||| | ||| || Sbjct 45568 GTAACGGGTTGTAGTCCTGGTGAATTTATTCATACCATGGGTGATACTCA--TATATATA 45625 Query 70460 A--ATCACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGC 70517 | |||| || | | ||||| ||| ||||||| || || | | | ||||| Sbjct 45626 ATGATCATATTAATGCTTTAAAAACTCAAATCGAACGTGAACCAAAAGCATTTCCTCGTT 45685 Query 70518 TGGAGTTTGCTCGTAAAGTTGAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAA 70577 || | ||| || ||| || | |||||||| |||||| || || |||||||| || | Sbjct 45686 TGAAATTTAGACGCAAAATTAATAATATTGATGATTTTAAATATGATGATTTTATTATTA 45745 Query 70578 AAGGTTACGATCC 70590 ||||| || || Sbjct 45746 CTGGTTATGAACC 45758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740954812548440