Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq188 154 1e-32 seq2177 116 3e-21 seq1319 102 6e-17 seq157 100 2e-16 seq34 82.4 6e-11 >seq188 Length=104369 Score = 154 bits (170), Expect = 1e-32 Identities = 160/207 (77%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 || || |||||||| || ||||||||| || | | |||||||| ||||| ||| Sbjct 83259 GTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTCTAACTGTTTACCA 83200 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 || |||| ||||||||||| || || ||||||||||| || |||||| ||||| Sbjct 83199 GCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGAATTTTT-TCTTT 83141 Query 15287 -ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGT 15345 || | || |||||||||||| |||| || ||||| |||||||||||||| || || || Sbjct 83140 GACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTACCAGTAAGTGT 83081 Query 15346 TTTTACAAAAATTTGCATATTTGAAAA 15372 ||| |||||||||||||| ||| |||| Sbjct 83080 TTTAACAAAAATTTGCATGTTTAAAAA 83054 >seq2177 Length=17275 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| || || |||||||| || ||||| || || ||| | || || Sbjct 4409 ACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTCA 4350 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| || ||| | || | |||||| || || ||||| ||||||||||| Sbjct 4349 AGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGG 4290 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || |||||| ||||| || ||||||||| | || || || || ||||||||||| Sbjct 4289 ATCTTTGCT-TTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTT 4231 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||||||| ||||||||||||||| Sbjct 4230 TCCAGTGAGAGTTTTAACAAAAATTTGCATA 4200 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || |||||||| ||||| ||||| ||| | | | ||||| ||||| Sbjct 4631 TGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGC 4572 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | ||||||||||| || || || || || ||||| || ||||||| Sbjct 4571 TTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGAATTTTG 4512 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 | || || || |||||||| ||| || || | |||||| || ||||| || Sbjct 4511 GTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTA 4452 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 || ||||||||||||||||||||| Sbjct 4451 AGTGTTTTTACAAAAATTTGCATA 4428 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||| |||||| || || |||||||| ||||| ||||| || | | ||||||| Sbjct 3953 ACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAGAGGGTACGGCCGTCTTCA 3894 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC-ACA 15273 | ||||||||||||| | || | |||||| ||||| ||||||||||||||||| | Sbjct 3893 AGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGA 3834 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 | ||||||| || || || || || ||| | ||| || || | ||| || || || Sbjct 3833 ATTTTTGCT-TTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTT 3775 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || |||||||| Sbjct 3774 TCCGGTAAGGGTTTTAACGAAGATTTGCAT 3745 >seq1319 Length=24104 Score = 102 bits (112), Expect = 6e-17 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || | | || | ||| || || || |||||||| || |||||||| | Sbjct 16834 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCTTTTTGGATATTGTAATC--TG 16777 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || || | ||||| |||||||| || || | ||||| ||||| || || | Sbjct 16776 ACAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGG 16717 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATT--TCTATGGTATCGCTATTTTC 15312 |||| ||||||||||| ||| || | ||||| | || || |||||||| || Sbjct 16716 GAATGCCTTCTTTGTCTTGAATCTT-CGCTTTA-ACTTGGTCAATGGTATCTGAGGACTC 16659 Query 15313 TACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| || | ||||| |||||||| || ||||| || || |||||||||||| Sbjct 16658 TACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCATA 16607 >seq157 Length=142614 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || | | || | ||| || || || |||||||| || || ||||| Sbjct 36717 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 36658 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| |||||||| |||||| | || || |||||||| || ||| Sbjct 36657 AAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGA 36598 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| || || ||| |||||| || || || |||||||| | || || Sbjct 36597 ATTCCTTCCTTATCTTGAATCTTTGCT-TTAACTTGATCAATGGTATCATTGGACTCGAC 36539 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | |||||||||||| || || || || || || || ||||||||| Sbjct 36538 TTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCATA 36490 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || |||||||| || || ||||| || | | | | ||||| ||||| Sbjct 37606 ATGGAGAGTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGACCATCTTCCAATTG 37547 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 ||| |||||| | ||||| ||||| || || ||||| ||||| || || ||| || Sbjct 37546 TTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTT 37487 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 |||| || || ||||||||||| || || || | |||||| |||||||| | Sbjct 37486 TGCT-TTAACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGG 37428 Query 15339 TCAGAGTTTTTACAAAAATTTGCATA 15364 | || || || || |||||||||||| Sbjct 37427 TGAGGGTCTTGACGAAAATTTGCATA 37402 >seq34 Length=176868 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 15207 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTT 15266 |||||||||||||| ||||||| | || | |||||||| || ||||||||||||| Sbjct 50804 CGTCTTCTAATTGTATGCCAGCAAAAATAAGGCGTTGTTGATCAGGAGGAATTCCTTCTT 50863 Query 15267 TGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAA 15326 ||||| ||| || || || | | || || ||||| || || || || || | Sbjct 50864 TGTCATTAATCTTACTTTTAAGTTTGTCAATTGTATCACTCGAAGTCACCTCCAATGTTA 50923 Query 15327 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGC 15361 | ||||| || || || ||||| ||||| || ||| Sbjct 50924 TTGTTTTTCCAGTTAGTGTTTTCACAAATATCTGC 50958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362129457969129