Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq2177 104 2e-17 seq188 98.7 8e-16 seq1319 89.7 4e-13 >seq2177 Length=17275 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | || ||||| |||||||||||||| || | | ||| | ||||| Sbjct 4410 CACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTC 4351 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || |||||||| || |||| || | |||||||| ||| | || |||||||| Sbjct 4350 AAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTG 4291 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || |||||| || ||| |||||| || ||| ||| | ||||||||||| Sbjct 4290 GATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTT 4231 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | |||||| |||||||||||||| Sbjct 4230 TCCAGTGAGAGTTTTAACAAAAATTTGCAT 4201 >seq188 Length=104369 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| || || || || ||||||||||||||||| | | || | || || Sbjct 83271 ACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTCT 83212 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 | ||||||||| ||| | || | | || |||||| ||| | || ||||| || | Sbjct 83211 AACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGA 83152 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| | ||| || | ||| ||||||| | || ||| | |||||||||||| Sbjct 83151 ATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTA 83092 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT-TTTAAA 19047 || || | ||||| |||||||||||||| |||||| Sbjct 83091 CCAGTAAGTGTTTTAACAAAAATTTGCATGTTTAAA 83056 >seq1319 Length=24104 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||| ||||| ||||||||||| | || || | || |||| |||||||| Sbjct 16804 GTTGACTCTTTTTGGATATTGTAATCTGACAAGGTACGTCCATCTTCCAATTGTTTACCG 16745 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | | ||||||||| ||| | ||| |||||||| ||| ||| ||| Sbjct 16744 GCAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTTA 16685 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || ||| | | ||||| | ||| ||| | ||||| |||||||| || | ||| Sbjct 16684 ACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTC 16625 Query 19025 TTGACAAAAATTTGCAT 19041 || || ||||||||||| Sbjct 16624 TTAACGAAAATTTGCAT 16608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414515862182986