Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1319 136 3e-27 seq188 129 4e-25 seq2177 100 2e-16 seq364 87.8 1e-12 >seq1319 Length=24104 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| || | ||| | ||| | || ||||||||||| ||||||||||| || Sbjct 16835 ACCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCTTTTTGGATATTGTAATCTGA 16776 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | || || |||||||| || || ||| || || |||||||| |||| ||| Sbjct 16775 CAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGG 16716 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 ||||||||||| || |||| | ||| ||| | ||| || || || | || Sbjct 16715 AATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTAC 16656 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || ||||| || |||||||| || |||||||||||||| Sbjct 16655 TTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 16608 >seq188 Length=104369 Score = 129 bits (142), Expect = 4e-25 Identities = 170/234 (73%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || | ||| || | ||||| || ||||| || |||||||| ||||||||||| || Sbjct 83289 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGA- 83231 Query 33203 AAATTGA--GTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 || ||| || || || || || || ||| ||||||||||||||| || |||| || Sbjct 83230 -AAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGG 83172 Query 33261 GTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 | || |||||||| || ||| | ||| ||| | | || || ||| | || || Sbjct 83171 GGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAA 83112 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTA 33374 | || | ||| || ||||| || ||||| ||||| || |||||||||||||||| Sbjct 83111 CTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTTA 83058 >seq2177 Length=17275 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGT-CAT 33218 ||||||||| | ||| ||||||||||| |||||||| ||||| | | ||| || ||| Sbjct 4410 CACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAA----GGGTTCGTCCAT 4355 Query 33219 CC---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTT 33275 || | ||| || || || || | ||||||||| || | ||| || |||||||| | Sbjct 4354 CCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGT 4295 Query 33276 CGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCG 33335 | ||| ||||||| | || || ||| | | ||| |||| ||| || | Sbjct 4294 CTTGGATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGG 4235 Query 33336 TTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||||| || |||||||| || ||||||||||| Sbjct 4234 TTTTTCCAGTGAGAGTTTTAACAAAAATTTGCAT 4201 Score = 89.7 bits (98), Expect = 3e-13 Identities = 146/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||||||||| || || ||||| || | | | ||| || | ||| || ||| Sbjct 3941 GTTGACTCTTTTTGAATGTTATAATCTGAGAGGGTACGGCCGTCTTCAAGTTGTTTGCCA 3882 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 || || | |||||||||||| | ||| || |||||||| || ||| ||| Sbjct 3881 GCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGAATTTTTGCTTTA 3822 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 ||| | ||| |||||| | || ||| || || || || || ||||| ||||| ||| Sbjct 3821 ACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGTAAGGGTT 3762 Query 33353 TTTACGAAAATTTGCATGTTTATGGTTAAT 33382 || ||||| ||||||||| || |||||| Sbjct 3761 TTAACGAAGATTTGCATG---ATTGTTAAT 3735 >seq364 Length=140482 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/214 (71%), Gaps = 9/214 (4%) Strand=Plus/Plus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 |||||| || |||||| |||| ||||| ||||| || ||| | | || |||||||| Sbjct 20967 ATGCAACGTAGACTCTCTTTGAATATTATAATCTGATAAAGTTTTTCCATCCTCCAATTG 21026 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC-TTTTTCGCTAATCG 33284 ||| ||| ||| || | |||||||||||| | || |||||||| |||||| | | Sbjct 21027 CTTACCAGCAAAAATAATACGTTGCTGGTCAGGAGGAATGCCTTCTTTTTTCTCGA---- 21082 Query 33285 CCT--GTTTTACT-GTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTC 33341 ||| | |||| | | | ||| |||||| | | | || || || | | ||||||| Sbjct 21083 CCTTAGATTTAATCATATCAATAGTGTCGCTTGAATCAAAATCTAGGATAACTGTTTTTC 21142 Query 33342 CCGTAAGAGTTTTTACGAAAATTTGCATGTTTAT 33375 | || | ||||| || ||||||| | | ||||| Sbjct 21143 CGGTCATTGTTTTCACAAAAATTTCCCT-TTTAT 21175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318733818785562