Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1319 123 2e-23 seq157 123 2e-23 seq188 114 9e-21 seq81 91.5 1e-13 seq97 86.0 4e-12 seq2177 82.4 5e-11 seq942 82.4 5e-11 >seq1319 Length=24104 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| || | | ||| | ||| || || ||||||||| ||||| ||||| Sbjct 16835 ACCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCTTTTTGGATATTGTAATCTGA 16776 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || ||| |||| ||||||||||| || ||||| ||||| |||||||| ||| | || Sbjct 16775 CAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGG 16716 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| ||| || ||| || ||| ||||||| | ||| || Sbjct 16715 AATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTAC 16656 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||||||||| | |||||| || || |||||||| Sbjct 16655 TTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 16608 >seq157 Length=142614 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||||||||||||||| ||| ||| |||| ||||||||||| || || || Sbjct 37593 TCTTTTTGAATATTATAATCCGATAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAG 37534 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| |||||||| || |||| | |||||| |||||| ||| ||| ||| || Sbjct 37533 ATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGG 37474 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | ||||| | | ||| || || | ||||||||||||||||| | ||||| || Sbjct 37473 TCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACG 37414 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 37413 AAAATTTGCAT 37403 Score = 104 bits (114), Expect = 2e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || |||||||||||||| || ||| ||| |||| ||||||||||| || || || Sbjct 37365 TCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAG 37306 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| ||||| || || | || | |||||| |||||| ||| ||| ||| || | Sbjct 37305 ATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGA 37246 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | ||||| | | ||| || || | ||||||||||||||||| | ||||| || Sbjct 37245 TCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACG 37186 Query 44111 AATATTT 44117 || |||| Sbjct 37185 AAAATTT 37179 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||||||||||||||| || ||| |||| ||||||||||| || || || Sbjct 36681 TCTTTTTGAATATTATAATCTGACAAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAG 36622 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || || ||||| || || |||| | ||||| |||||| ||| ||| ||| || | Sbjct 36621 ATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGCTTTAACTTGA 36562 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| ||||| | ||| || || | ||||| ||||| || || | ||||| || Sbjct 36561 TCAATGGTATCATTGGACTCGACTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACG 36502 Query 44111 AATATTTGCAT 44121 ||||||||||| Sbjct 36501 AATATTTGCAT 36491 >seq188 Length=104369 Score = 114 bits (126), Expect = 9e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| |||| || |||||||||||||| |||||| | | ||| |||| || Sbjct 83271 ACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTCT 83212 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 || ||||| || |||||||| || ||||| || ||| | || | |||||||||||| | Sbjct 83211 AACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGA 83152 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||||| |||||| || | | ||||| || || || | ||||| |||||| Sbjct 83151 ATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTA 83092 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATGT 44123 || || | || || ||||| |||||||||| Sbjct 83091 CCAGTAAGTGTTTTAACAAAAATTTGCATGT 83061 >seq81 Length=89240 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/172 (72%), Gaps = 1/172 (1%) Strand=Plus/Minus Query 43964 TCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCT 44023 ||||| || |||||| | || ||| | || | ||||||||||| ||| | ||||||| Sbjct 50249 TCATCCTCTAATTGTGTACCAGCATAAATAATACGTTGCTGGTCAGTAGGAATACCTTCT 50190 Query 44024 TTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTA 44083 || ||| || |||||||| ||| ||||| ||||| | | |||||| | ||| Sbjct 50189 TTGTCTTCGATCTTTTGTTTAACCTGAGCAATAGTATTATTTGATTTCACATCAAGCGTT 50130 Query 44084 ATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCGAGTCTTTGTA 44135 || ||||| ||| || || |||||||| | ||||||| ||| | | |||| Sbjct 50129 ATGGTTTTTCCGAATAGCGTTTTCACAAAAACTTGCATG-CGAATATGTGTA 50079 >seq97 Length=146771 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 43922 AGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTT 43981 || ||||||||||| || ||||||||||| | || ||||||||| || |||||| || Sbjct 24425 AGTGTGCTCTCTTTCTGGATATTATAATCACTCAAGGTACGCTCATCTTCTAATTGTCTT 24366 Query 43982 CCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGT 44041 || ||||| || || ||||| | |||| | ||||| || ||| || || | Sbjct 24365 CCAGCAAAAATAAAACGTTGACTATTAGGAGGAATTCCTTCCTTGTCTTGGATCTTGCAT 24306 Query 44042 TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAA 44101 || || | | ||||| | || ||| || || | || | ||||| ||||||| Sbjct 24305 TTAACTAGGCTGATGGTATCAGACGACTCTACCTCCAAGGTTACCGTTTTTCCGGTTAGT 24246 Query 44102 GTCTTCACAAATATTTGCATGTCGA 44126 || || ||||||| |||||| ||| Sbjct 24245 GTTTTTACAAATACCTGCATGGCGA 24221 >seq2177 Length=17275 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||||||| || || ||||||||||||||| || || | || |||| || Sbjct 4410 CACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTC 4351 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | |||||| || || || || | |||||||| || | || | ||||||||| ||| Sbjct 4350 AAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTG 4291 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 || ||| ||| || | | | ||||| | | ||| || || | ||||| ||||| Sbjct 4290 GATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTT 4231 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | ||| || ||||| |||||||| Sbjct 4230 TCCAGTGAGAGTTTTAACAAAAATTTGCAT 4201 >seq942 Length=78137 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || || |||||||| || |||||||||||| ||| | ||||| ||||| || Sbjct 25471 CCACCCCTTAATCTTAATACTAAATGTAGCGTGGACTCATCACATATATTGTAATCACTT 25412 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || ||| |||| || | ||| || || ||||| || || | ||| || || | ||| Sbjct 25411 AAAGTACGGCCATCTTCAAGTTGCTTACCAGCAAAAATTAATCTTTGTTGATCTGGTGGT 25352 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||| || | ||||||| ||| | | ||| ||||| ||| || Sbjct 25351 ATACCTTCTTTTTCAGTAATTTTTGTTTTTAATTGATCAATTGTATCACTAAACTCGACT 25292 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 || | || || ||||| || ||||| || || || Sbjct 25291 TCAATTGTTATAGTTTTTCCAGTTAATGTTTTAAC 25257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354728874511812