Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2 226 2e-54 >seq2 Length=211661 Score = 226 bits (250), Expect = 2e-54 Identities = 319/441 (72%), Gaps = 8/441 (2%) Strand=Plus/Plus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||||||||| || || | ||||||||| || |||||||| |||| ||| ||| Sbjct 204653 TTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTGTAAACTAATTAA 204712 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 ||||||||||| |||||||| | ||| ||| ||||| | || | | | | ||| Sbjct 204713 ATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCACCAAGTGCCACTAA 204772 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 ||||| ||||| ||||| || || || | ||||||||||| |||||| || ||||| Sbjct 204773 TAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCGTTCATACCAATTAA 204832 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTT-CGATAACTA 13097 || || || | |||||||||||||| | || |||||| ||| |||| || || || Sbjct 204833 ATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCGCTTCCGCTA--TA 204890 Query 13098 TGTCTCTTATTACGTTCTCTAATGGAGGATTTG-AT--AGATGCTTAAACATCATACATG 13154 | ||| ||| | | | |||||| || || ||||| | || | | ||||| Sbjct 204891 -ATAGCTT-CTACAGTTTTTGTTGGAGGTCGTGCATGAAGATGAGTGAATAAGAGACATG 204948 Query 13155 CAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCG 13214 |||||||||| |||||||||||||||| | ||||| ||||| ||||| |||| || | Sbjct 204949 CAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAAAAGTTAATCCTG 205008 Query 13215 GCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTC 13274 |||| | |||| ||| || | |||||| || | || || | || ||||| ||||||| Sbjct 205009 GCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAGAAAAGAATATTC 205068 Query 13275 CTTCAACTGCTGCAAACGCTA 13295 ||||||| || |||||||||| Sbjct 205069 CTTCAACAGCGGCAAACGCTA 205089 Score = 114 bits (126), Expect = 1e-20 Identities = 196/280 (70%), Gaps = 7/280 (3%) Strand=Plus/Plus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 ||||||| ||| ||||| | | |||||||||||||| |||||||| ||| || || Sbjct 205294 ATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATGATCTGA 205353 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAA 13539 || |||||||||||||| || |||| | || ||||| | ||||| | ||| |||| Sbjct 205354 AATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAA-CGTTCCACTAA 205412 Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttt 13599 ||||| || || || || || || ||||| || || | | ||| |||||| Sbjct 205413 ATTTTCATTGACAATACCATCCGAGGCTGCAAAGAAGGCCAAAACGTGAGAAATAAAGAA 205472 Query 13600 tttttCGTTTTCTGACAACTTTA----ACCAATCTGGAAAATCTTTTGATAAATCTACCT 13655 |||||| | || | || |||| |||||| | ||| || || | || || | Sbjct 205473 TTTTTCTTCATC-GTTAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTCAACTT 205531 Query 13656 CCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACAT 13695 ||||||| |||||||| ||||| | ||||| || ||||| Sbjct 205532 CCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACAT 205571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430923208473138