Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2177 109 5e-19 >seq2177 Length=17275 Score = 109 bits (120), Expect = 5e-19 Identities = 154/215 (72%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| ||||||||||| ||| |||||||| ||||| |||| | ||| | ||||| Sbjct 4410 CACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTC 4351 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC--- 48633 || || |||||| || |||| | ||| |||||||| || | || ||| ||||| Sbjct 4350 AAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTG 4291 Query 48634 CATAATT--TTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691 || || || | |||||| | |||||||||| |||||| || | || ||| Sbjct 4290 GATCTTTGCTTTTACTTGAT-----CGATGGTATCGGAAGACTCAACTTCCAAAGTAATG 4236 Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||||||||| |||||||| ||||| Sbjct 4235 GTTTTTCCAGTGAGAGTTTTAACAAAAATTTGCAT 4201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421193344965269