Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq206 150 2e-31 seq346 102 1e-16 seq82 82.4 9e-11 >seq206 Length=70616 Score = 150 bits (166), Expect = 2e-31 Identities = 248/351 (71%), Gaps = 10/351 (3%) Strand=Plus/Minus Query 7055 TATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATT 7114 || ||| ||||||||||||| | | | || ||||||||||||||| | ||||||||| Sbjct 45332 TACCAGCTGGATTCCAAGCACTGAGAATGATTCGTCTATCATTTGGAGTA-TTTTTAATT 45274 Query 7115 TTGTT-ATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTT 7173 || | || | ||| | |||||| | ||| | ||| |||| |||| |||| Sbjct 45273 TTATCGATGACCTCTTGCAGTTGATCAACACCTTTACCAGTGTAATCCGTATCGCAATCA 45214 Query 7174 ATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCT 7233 || || | ||| ||||||||||||||||| || ||||||| |||||| |||||||||||| Sbjct 45213 ATGTACTCAGCACCAAAATGTCTCCATTGGAATCCATAAACAGGACCCAAATCACCTTCT 45154 Query 7234 TCACGATGATTAAATCCTAA-TCGATTTAAATTAGATT---TTGATCCATAAGCATCCCA 7289 | | ||| | | | || || | || |||| ||| || |||| | | ||||| Sbjct 45153 TTTCTATG-TGATAGCCCAATTTTATCCAAAT---ATTCACGAGAACCATTACCGTCCCA 45098 Query 7290 AATATGTACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAA 7349 |||||| | | ||||| | ||||| | ||||||| ||||||| |||||||| Sbjct 45097 AATATGAATACCTTTTTCGGTTAAATGTTTGCTATTTGTATTACCTTTAATAAACCATAA 45038 Query 7350 AAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGG 7400 | |||||||| || ||||| ||| | | || || || |||||||| Sbjct 45037 TAATTCTTCTATAATAGCACGCGTAAAAACGCGCTTAGTTGTTAATAAAGG 44987 Score = 118 bits (130), Expect = 1e-21 Identities = 241/349 (69%), Gaps = 13/349 (4%) Strand=Plus/Minus Query 6700 GGATGAGGATTATAATC--TAACAATTCAAAATCTTCAAATTTAAAATCACATAAATTAT 6757 |||||||| | |||| | ||| ||| |||||| ||| ||||||||||| | ||||| Sbjct 45764 GGATGAGGTTCATAACCAGTAATAAT--AAAATCATCATATTTAAAATCATCAATATTAT 45707 Query 6758 CAGACtttttttttAATATTACAACAGGTGAAGGTTTTATTGATCGAGTT--AATTGTTC 6815 | | ||| | ||| || ||| | || | ||| | | || ||| | ||| Sbjct 45706 TA-ATTTTGCGTCTAAATTTCAAACGAGGAAATGCTTT-TGGTTCACGTTCGATTTGAGT 45649 Query 6816 TTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTC 6875 ||||| ||| || |||||||| ||| ||||||| ||| || | |||||||||||||| Sbjct 45648 TTTTAAAGCATTAATATGATCATTATATATATGAGTATCACCCATGGTATGAATAAATTC 45589 Query 6876 ACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTAC 6935 ||| || | | | | |||||||| | || ||||||| ||||| || | Sbjct 45588 ACCAGGACTACAACCCGTTACATGAGCAATCATATGAGTTAATATAGCATAGCTTGCAAT 45529 Query 6936 ATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAAAAT 6995 ||||| |||||||| | ||| | ||| ||||||||||||| |||| ||||| | Sbjct 45528 GTTAAATGGTACACCAAGTCCAACATCACATGATCTTTGATAAAGAAGACACGATAATCT 45469 Query 6996 ATT-GTCT---ATAGCATAAAATTGACACAATACATGACATGGAGGTAA 7040 || || | ||| |||| ||||| || || | ||||||||| ||||| Sbjct 45468 TTTCGTATTTGATA-CATAGAATTGGCAAAACATATGACATGGTGGTAA 45421 >seq346 Length=100423 Score = 102 bits (112), Expect = 1e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 19394 CAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGT 19453 |||||||| ||| |||||| | |||||||||||||||||||||||||| || || Sbjct 30998 CAAAAAGGAACAATTGGTATTACATATCGTCAAGAAGATATGCCTTTTACAGCTGAAGGG 30939 Query 19454 ATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGACGCTT 19507 || | ||||| ||| | ||||| || |||||| |||||||||| |||||| || Sbjct 30938 ATTGCACCGGACCTTGTCATTAATCCTCATGCTATTCCAAGTCGTATGACGATT 30885 >seq82 Length=116550 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 19354 AATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTAT 19413 ||| || ||||| || ||||| || || | | || ||| ||||| ||| ||| || Sbjct 78183 AATTCCAGAAATTGGAGATAAATTCGCGAGTCGTCATGGTCAGAAAGGAACAATTGGAAT 78124 Query 19414 GATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTAT 19473 | ||||| ||||||||||||||| |||||| |||| | || || ||||||| Sbjct 78123 CACTTATCATCAAGAAGATATGCCATTTACTGCTAGTGGTGTTACACCTGACATTATTAT 78064 Query 19474 TAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || ||||| ||| |||| ||||| ||||| Sbjct 78063 AAATCCACACGCTATTCCTAGTCGTATGAC 78034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595788063980400