Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq157 107 2e-18 seq2177 96.9 3e-15 seq1319 95.1 1e-14 >seq157 Length=142614 Score = 107 bits (118), Expect = 2e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| || || | || | || | ||| ||||| ||||| | Sbjct 36729 AAAATTTGCATACCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATA 36670 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 |||||||| || ||| | ||| |||| ||||| || | |||||||| | ||| Sbjct 36669 TTATAATCTGACAAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGT 36610 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||||||||| ||||| || || | ||| ||||| || || | | || ||| Sbjct 36609 TGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCAATGGTATCA 36550 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| |||| || |||||||| |||||||| || || || || || ||||| Sbjct 36549 TTGGACTCGACTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 36491 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTT 94867 ||||||||| ||||| | |||||||| ||| || || ||| |||| ||||| Sbjct 37600 AGTAGATTCTTTTTGAATATTATAATCCG--ATAAAGTACGACCATCTTCCAATTGTTTA 37543 Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 || | ||||| || | |||||||||||||||||||||||| || || | ||| ||||| Sbjct 37542 CCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTTGCT 37483 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || || | | | || |||| | || || |||| || || ||||| || || || Sbjct 37482 TTAACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTGAGG 37423 Query 94988 GTTTTCACAAAGATCTGCAT 95007 || || || || || ||||| Sbjct 37422 GTCTTGACGAAAATTTGCAT 37403 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| || || | || | || | ||| ||||||||||| | Sbjct 37413 AAAATTTGCATACCACCTCTTAAGCGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATA 37354 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 ||||| || | ||| | ||| |||| ||||| ||| | ||||| || | ||| Sbjct 37353 TTATAGTCCGATAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGT 37294 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| || |||||||| || || | ||| ||||| || || | | || ||| Sbjct 37293 TGATCTGGGGGGATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCTATGGTATCA 37234 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGAT 95001 | | ||||| |||| || || ||||| || || || || || || || || Sbjct 37233 GAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAAT 37181 >seq2177 Length=17275 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/204 (71%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTT 94867 ||| || || ||||| | ||||||||| | | || || | || || || ||||| Sbjct 3942 AGTTGACTCTTTTTGAATGTTATAATC--TGAGAGGGTACGGCCGTCTTCAAGTTGTTTG 3885 Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 || | || || | | |||||| ||||| ||||| ||||||||||| | ||||||||| Sbjct 3884 CCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGAATTTTTGCT 3825 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || || | | | |||||| | || || |||| ||||| || ||||| ||||| Sbjct 3824 TTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGTAAGG 3765 Query 94988 GTTTTCACAAAGATCTGCATGCTT 95011 ||||| || ||||| |||||| || Sbjct 3764 GTTTTAACGAAGATTTGCATGATT 3741 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| || ||||| ||| | || || | | |||||||||||| |||||||||||||| Sbjct 4356 ATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTT 4297 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || ||||| || || ||| || || | || || || | || || Sbjct 4296 GTCTTGGATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAAT 4237 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||| |||||||| ||||| || ||||| Sbjct 4236 GGTTTTTCCAGTGAGAGTTTTAACAAAAATTTGCAT 4201 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGC 94861 ||| | ||| ||||| ||||| | ||||||||| | || || || ||| |||| Sbjct 4632 GTGAAGAGTTGATTCTTTTTGGATGTTATAATCCG--AAAGAGTACGACCATCTTCCAAT 4575 Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 || || || | || || || | ||||||||||||||| ||||| ||||| || | |||| Sbjct 4574 TGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGAATT 4515 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || | || || | | || |||| ||||| |||| || || || || ||| Sbjct 4514 TTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCA 4455 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| ||||| || ||||| Sbjct 4454 GTAAGTGTTTTTACAAAAATTTGCAT 4429 >seq1319 Length=24104 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 94861 CTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAAT 94920 |||||| || |||| || |||||||| ||||||||||| |||||||||||||| | ||| Sbjct 16982 CTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGAGGGATACCTTCTTTGTCTTGAAT 16923 Query 94921 TTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980 |||| |||||| | | || |||| || || |||| || || ||||| || Sbjct 16922 CTTTGTCTTGACTTGTTCAATTGTATCAGAAGATTCAACTTCAAGAGTAATAGTTTTCCC 16863 Query 94981 AGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| |||||||| Sbjct 16862 GGTGAGGGTCTTTACAAAAATCTGCAT 16836 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || || ||||| || || | ||| | || | ||| || || ||||| | Sbjct 16847 AAAAATCTGCATACCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCTTTTTGGAT 16788 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || ||||| || || ||| |||| ||||| ||| ||||||| || | ||| Sbjct 16787 ATTGTAATCTGACAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTG 16728 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 |||||| || ||||| ||||||||||| | ||| || || || || | | | || || Sbjct 16727 CTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTATC 16668 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || |||| || || ||||| || |||||||| || || || || ||||| Sbjct 16667 TGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 16608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448228052580840