Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2177 129 9e-26 >seq2177 Length=17275 Score = 129 bits (142), Expect = 9e-26 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||| | | ||||| |||||||| ||||| ||||||||||| || || Sbjct 6288 CGCAAAGCGCCATCGTAAAATCCTTCGTGATAACATTCAAGGTATCACCAAGCCTGCCAT 6229 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||||||||||||||| || ||| |||| || | |||| ||||| | Sbjct 6228 CCGTCGTCTTGCTCGTCGTGGTGGAGTAAAACGTATCTCGGGTCTCATCTACGAAGAAAC 6169 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 ||||| ||| ||||| | ||||| Sbjct 6168 TCGTGGTGTCTTGAAAGTGTTCCT 6145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79064896674417