Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1915 208 2e-48 seq2 188 2e-42 >seq1915 Length=14346 Score = 208 bits (230), Expect = 2e-48 Identities = 589/888 (66%), Gaps = 20/888 (2%) Strand=Plus/Minus Query 363097 TATGATGGTGTTACAACTGTTCAGCTAGACAATCTTGCCGTAGAAACTGCAACTTATCTG 363156 ||| | ||||||| |||||| | |||| ||| | || | |||||| || | ||| || Sbjct 11419 TATCAAGGTGTTAGCACTGTTGAATTAGATAATTTGGCTGCAGAAACGGCCGCGTATATG 11360 Query 363157 ACCATGACGCATCCTGATTACTCCAAACTGGCTGCTCGCATTGCAGTTTCGTCTCTTCAT 363216 || | | ||||| || || || || |||||||| ||||| ||||| ||||||| Sbjct 11359 ACGACTAAACATCCGGACTATGCCGTCCTTGCTGCTCGTATTGCTGTTTCTAATCTTCAT 11300 Query 363217 AAAATGACATCAAATAAGTTTT--CCAGTGTCATGGATAGTCTGTATAACTATGTCAATA 363274 ||| || | ||| ||||||| ||| ||| | || ||| ||||| ||| | ||| Sbjct 11299 AAA--GAAACTAAAAAAGTTTTTTCCAATGTTGTTGAAGATCTTTATAATTATATAAATC 11242 Query 363275 CAAAGACCGGTAAGTGGTCACCACTCATTGCCGATGACA-TTATTGAAT-GT-ATCCGTT 363331 | || || || || | | || | ||| | || | | |||| || || || | Sbjct 11241 CGAAAACAGGGAAACGCGCGTCAATGATTTCTGAAAAAACTTATAATATTGTGAT--GAA 11184 Query 363332 CTAATGCGGAAGTTTTCGATG--ACGTTATCAATTATGAGAAGGATCTCGAGTATGATAT 363389 | ||| ||||| | || ||| |||| |||||| | ||| | ||| || Sbjct 11183 C-AATTCGGAAAAACTTAATTCTACG--ATCATTTATGATAGAGATTATAAATATAATTA 11127 Query 363390 TTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGA 363449 ||| |||| ||| || | || | ||| || || | || || ||| | ||| ||| Sbjct 11126 TTTTGGATTTAAAACTCTTGAAAGATCTTATCTTTTACGAATAGGTGGAAAAGTTGCTGA 11067 Query 363450 ACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGC 363509 || || || |||||| | ||||| || || |||| || || | ||| | || || Sbjct 11066 GCGTCCCCAACATATGCTTATGCGCGTAGCGGTTGGGATTCACGGAGATGATATCGAAGC 11007 Query 363510 CGCGATTGAAACATATAAGCT--TCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACA 363567 || |||||||| || || || | | || || | || || ||||| | || || Sbjct 11006 TGCTATTGAAACTTACAATCTGATGTCAGAAAA-GT-TCTTTACTCACGCATCTCCGACT 10949 Query 363568 ATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAG 363627 ||| |||||||| || | || || || | || ||| |||||| ||| ||||| Sbjct 10948 TTGTTTAATGCTGGCACACCTAGACCTCAACTTTCGAGTTGTTTTCTTTTAACTATGAAA 10889 Query 363628 GACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAAT 363687 || ||||| || ||||| |||| ||| || | || | || || | ||||| |||| | Sbjct 10888 GATGATTCAATAGAGGGAATCTATGATACTTTGAAAACATGCGCAATGATTTCTAAGACT 10829 Query 363688 GCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGG 363746 ||||| || |||||||| || || || ||||||| |||| | ||| ||| || Sbjct 10828 GCAGGTGGTATTGGTGTGAACATTCATAACATTCGTGCGACAGGATC-TTATATTGCTGG 10770 Query 363747 CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAG 363806 ||| || || || ||||| | |||| ||| | || || | | | ||||| || || Sbjct 10769 AACAAATGGTTATTCAAATGGAATTATTCCTATGTTACGCGTTTATAATAATACCGCTAG 10710 Query 363807 GTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCA 363866 || || || || || ||| || || || ||||||||||| ||| | || | Sbjct 10709 ATATGTTGATCAAGGAGGAAACAAACGTCCGGGCGCGTTTGCTATTTATTTAGAAACGTG 10650 Query 363867 TCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCG 363926 ||| | || |||||||| ||| | || | ||||| || |||||||| ||| | || Sbjct 10649 GCATCCTGACATTTTTGATTTTATGGATTTAAAAAAAAATACTGGAAAAGAAGAAGTTCG 10590 Query 363927 TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAA 363974 |||||| ||| | || ||||||||||||||||| || | ||||||||| Sbjct 10589 TGCACGGGATTTATTTTATGCACTTTGGGTTTCGGATCTTTTTATGAA 10542 >seq2 Length=211661 Score = 188 bits (208), Expect = 2e-42 Identities = 360/521 (69%), Gaps = 16/521 (3%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAAT---GAACGTTCATTCGCGGAACGT 22494 || || || |||||||| || |||||| | || ||| |||||| || |||||| Sbjct 205153 AAAAAAGCGGATTGGGCTCTTCGATGGATTTCCGATAAGGAATCTTCATTTGCTGAACGT 205094 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-CAATCTT 22553 ||| | || ||||| | |||||||| || |||||||||||||| ||| | | ||||||| Sbjct 205093 CTTGTAGCGTTTGCCGCTGTTGAAGGAATATTCTTTTCTGGAGC-TTTCGCGTCAATCTT 205035 Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613 |||| |||| ||| | | ||| ||||| || |||| ||||| || || ||||| || Sbjct 205034 TTGGTTAAAGAAAAGAGGAATGATGCCAGGATTAACTTTTTCCAACGAACTAATTTCTCG 204975 Query 22614 AGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCAT-ATCATTCATA 22672 |||||| || | ||| |||||||| ||| | ||| || | |||| |||| || Sbjct 204974 AGATGAAGGATTGCATTGTGATTTTGCATGTCTCTTAT-TC--ACTCATCTTCATGCA-C 204919 Query 22673 AACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTAT 22732 || |||| |||||||| | |||||| | | || ||| | | |||| || Sbjct 204918 GACCTCCAACAAAAACTGTAGAAGCTATTATAGCGGAAGCGGTTACAATAGAACAAGAAT 204859 Query 22733 TTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACAT 22792 || | || || |||||||| | | | |||||||| || || | | ||||| | || Sbjct 204858 TTTTAACAGAAGCATTACCAGTTAATTTAATTGGTATGAACGCGAATTTAATGAAAAAAT 204799 Query 22793 ATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACG 22852 ||||| ||||||| || ||| | ||||| | |||| ||| ||||| ||||| Sbjct 204798 ATATTGAATTTGTAGCTGATAGATTATTAGTGGCACTTGGTGGAGCAAAATTGTATAATT 204739 Query 22853 TCGTTAATCCATTTGAATGGATGGA---ACTTATTTCACTTGAAGGAAAGACCAATTTCT 22909 | ||||| ||||| | ||||| | ||| || || |||| || || ||||||| Sbjct 204738 CAGAGAATCCTTTTGATTTTATGGATTTAATTAGTTTAC---AAGGTAAAACAAATTTCT 204682 Query 22910 TCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 | |||||| | || || || |||||||| || |||||| Sbjct 204681 TTGAAAAACGCGTATCAGATTATCAAAAAGCTGGAGTTATG 204641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303165416512358