Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq2177 125 6e-24 seq188 113 4e-20 seq157 107 2e-18 seq1319 104 2e-17 seq81 93.3 4e-14 >seq2177 Length=17275 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || || ||||| || || ||||| || || ||| | ||| || || | Sbjct 3745 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 3804 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 |||||| ||| ||||| ||| ||||||| || |||||||| | ||| || ||| Sbjct 3805 GACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAG 3864 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | ||||||| || ||||||||| | ||||| | | ||| | | ||||||||| Sbjct 3865 CAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGCCGTACCCTCTCAGATTATAAC 3924 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||||||||| ||| | ||| | || | || | || ||||| Sbjct 3925 ATTCAAAAAGAGTCAACTCTTCATCTAGTACTTCGACTTCGCGGAGG 3971 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| ||||| |||||||||||||| | ||| ||||| | Sbjct 4201 ATGCAAATTTTTGTTAAAACTCTCACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 4260 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | | ||||||||| ||| || || |||||||| | ||| |||||| Sbjct 4261 GATACCATCGATCAAGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGATCAG 4320 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | || |||| || || |||||| | || |||| |||| | | || || || Sbjct 4321 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 4380 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 |||||||||||||| || | ||| ||||| Sbjct 4381 ATTCAAAAAGAGTCAACACTTCATTTGGTG 4410 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || || || |||||||| || |||||||| ||| | || |||||| Sbjct 3973 ATGCAAATCTTCGTAAAGACGCTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 4032 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | | ||||||||| |||||| ||||| || || ||||| || ||| Sbjct 4033 GATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 4092 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | || |||| || || |||||| | || |||| |||| | |||| || || Sbjct 4093 CAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAAT 4152 Query 115466 ATTCAAAAAGAGTCTACTATACAT 115489 ||||||||||| || ||| | ||| Sbjct 4153 ATTCAAAAAGAATCCACTCTTCAT 4176 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| || || || || || |||||| | || || || Sbjct 4429 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 4488 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| || || ||| |||||| |||||||| || |||| |||||| Sbjct 4489 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAG 4548 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | |||| || || || ||||| ||||||| || | | ||||||||| Sbjct 4549 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAAC 4608 Query 115466 ATTCAAAAAGAGTCTACT 115483 || |||||||| || ||| Sbjct 4609 ATCCAAAAAGAATCAACT 4626 >seq188 Length=104369 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 115280 TTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG 115339 ||||| |||||||||||||| ||||| || || || ||||||||||| | ||| || Sbjct 83057 TTAAACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAA 83116 Query 115340 TCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTT 115399 ||||| || | | |||| ||| |||||||| ||||||||||| ||||| Sbjct 83117 AGTAGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCG 83176 Query 115400 GATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGAT 115459 ||||| ||| | | || | ||| || ||||| |||||||||| | | ||||| Sbjct 83177 GATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTTCCGAT 83236 Query 115460 TATAACATTCAAAAAGAGTCTACTATACATATGGT 115494 || || ||||||||||| || || |||| |||| Sbjct 83237 TACAATATTCAAAAAGAATCAACATTACACTTGGT 83271 >seq157 Length=142614 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || ||||| || || || || |||||||||||| | ||| ||||||| Sbjct 36491 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 36550 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| ||||| ||| ||| ||| ||||| ||||| | || ||||| Sbjct 36551 GATACCATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 36610 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | || || |||||||| ||||||| | || || | |||||||| Sbjct 36611 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTGTCAGATTATAAT 36670 Query 115466 ATTCAAAAAGAGTCTACTATACAT 115489 ||||||||||| || ||| | ||| Sbjct 36671 ATTCAAAAAGAATCAACTCTCCAT 36694 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| ||||| || ||||| || ||||| |||||| | ||| |||||| Sbjct 37403 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 37462 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | | ||||| ||| ||| ||| ||||| ||||| | || |||||| Sbjct 37463 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 37522 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | || || |||||||| ||||||| || | | |||||||| Sbjct 37523 CAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAAT 37582 Query 115466 ATTCAAAAAGAGTCTACTATACAT 115489 ||||||||||| |||||| | ||| Sbjct 37583 ATTCAAAAAGAATCTACTCTCCAT 37606 >seq1319 Length=24104 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || || || || || || ||||| ||||| | ||| |||||| Sbjct 16608 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 16667 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| ||||| ||| || ||| || ||||||||| | ||| |||||| Sbjct 16668 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 16727 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | ||| || |||||||| ||||||| ||| || | ||||| || Sbjct 16728 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAAT 16787 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 || ||||||||||| ||| | ||| | ||| Sbjct 16788 ATCCAAAAAGAGTCAACTCTCCATCTCGTG 16817 >seq81 Length=89240 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||| ||||||| |||||||| ||||||||||| || | || | | || | Sbjct 50092 ATGCAAGTTTTTGTGAAAACGCTATTCGGAAAAACCATAACGCTTGATGTGAAATCAAAT 50151 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 | ||| ||| || || |||||||| || | || |||||||| | || ||| ||| Sbjct 50152 AATACTATTGCTCAGGTTAAACAAAAGATCGAAGACAAAGAAGGTATTCCTACTGACCAG 50211 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | |||||||||| || | ||||||||| ||||| | | | || | |||||| Sbjct 50212 CAACGTATTATTTATGCTGGTACACAATTAGAGGATGATTACATCTTGTCAGATTATGGT 50271 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || | || || || ||| | ||| | || | ||| | || || |||| Sbjct 50272 ATCTATAAGGAATCAACTTTGCATCTTGTACTTAGACTACGTGGCGGAA 50320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425285582856280