Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq188 159 2e-34 seq4626 140 2e-28 seq3219 140 2e-28 seq882 140 2e-28 seq661 140 2e-28 seq59 140 2e-28 seq1319 136 3e-27 seq2177 111 1e-19 seq157 109 4e-19 seq2593 107 1e-18 seq34 102 5e-17 seq3635 98.7 7e-16 >seq188 Length=104369 Score = 159 bits (176), Expect = 2e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | ||||| | ||||| || | || || ||||||||||||||||| || Sbjct 83289 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAA 83230 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | |||| | || ||||| ||||| || |||||||||| ||||||||||| | |||| Sbjct 83229 AGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGG 83170 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||| || |||||||| || || || | || ||||| | |||||||||| Sbjct 83169 ATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACT 83110 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 ||||| ||||| |||||||| || | ||||| || || || ||||||||| Sbjct 83109 TCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTT 83059 >seq4626 Length=3558 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1807 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1866 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1867 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1901 >seq3219 Length=7993 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 7701 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 7760 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 7761 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 7795 >seq882 Length=45769 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 293 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 234 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 233 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 199 >seq661 Length=37521 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 37229 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 37288 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 37289 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 37323 >seq59 Length=186741 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 138890 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 138949 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 138950 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 138984 >seq1319 Length=24104 Score = 136 bits (150), Expect = 3e-27 Identities = 171/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| ||||| | ||| | ||| ||||| ||| ||||| ||||||||||| | Sbjct 16836 TACCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCTTTTTGGATATTGTAATCTG 16777 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| |||| | || || |||||||| |||||||| || | |||||| ||||| | || Sbjct 16776 ACAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGG 16717 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACA---GTATCTCCACTTT 38265 | | ||||||||||| | | | | || |||| | | ||| || |||||| | Sbjct 16716 GAATGCCTTCTTTGT-CTTGAATCTTCGCTTTAACT--TGGTCAATGGTATCTGAGGACT 16660 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| | |||||||||||||| || | || || ||||| || ||||| Sbjct 16659 CTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 16608 >seq2177 Length=17275 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||||||||| || ||| |||||||||||||| |||| Sbjct 4429 TACCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAG 4370 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || | |||||| ||||| || || || ||||| ||||| | || Sbjct 4369 AAAGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGG 4310 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| || ||| || || | | || ||||| | |||| Sbjct 4309 GAATACCTTCTTTGTCTTGGATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAA 4250 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || ||||| ||||| || || | ||||| || || || ||||| Sbjct 4249 CTTCCAAAGTAATGGTTTTTCCAGTGAGAGTTTTAACAAAAATTTGCAT 4201 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||||||||| ||| |||||||| || ||||| || | ||| |||| || | ||| Sbjct 3948 ATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAGAGGGTACGGCCGTCTTCAAGTTG 3889 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 ||| || || || || || ||||| || || | ||| | ||||||||||| |||||| Sbjct 3888 TTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGAATTTT 3829 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 | || || | | | ||| || | ||||||||| | || || || || || || Sbjct 3828 TGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGT 3769 Query 38294 CAAGGTTTTCACGAATATCTGCATGTTT 38321 | |||||| ||||| || |||||| || Sbjct 3768 AAGGGTTTTAACGAAGATTTGCATGATT 3741 >seq157 Length=142614 Score = 109 bits (120), Expect = 4e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| ||||| | || | ||| ||||| || ||||||||||| ||||| | Sbjct 36719 TACCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTG 36660 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| ||| | || || |||||||| || || || |||| |||||||||||| | | Sbjct 36659 ACAAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAG 36600 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATC--TCCACTTTC 38266 | | ||||| || || ||| ||| || || | | | ||||| | || || Sbjct 36599 GAATTCCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCAATGGTATCATTGGAC--TC 36542 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| | ||||| ||||| || || | ||| || |||||||| ||||| Sbjct 36541 GACTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 36491 Score = 107 bits (118), Expect = 1e-18 Identities = 97/121 (80%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| | ||| | || | ||||||||| ||| || ||||| |||||||||| Sbjct 36491 TACCACCTCTAAGACGGAGTACGAGATGAAGAGTTGACTCTTTCTGAATGTTGTAATCAG 36432 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGAT-CGGAG 38207 | || |||| |||| || || |||||||||||||| |||| ||||||||||| ||||| Sbjct 36431 ATAAGCTACGTCCGTCTTCCAACTGTTTTCCGGCAAAGATTAAGCGTTGTTGATCCGGAG 36372 Query 38208 G 38208 | Sbjct 36371 G 36371 Score = 100 bits (110), Expect = 2e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| || || | || | ||| ||||| |||||||||||||| || || | Sbjct 37403 TACCACCTCTTAAGCGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCG 37344 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| ||| | || || |||||||| ||||| || || | |||||||||||| | || Sbjct 37343 ATAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGG 37284 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| || || ||| ||| || || | | | ||||| || | Sbjct 37283 GGATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGA 37224 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATAT 38311 |||| | ||||| |||||||| || | ||| || ||||| || Sbjct 37223 CTTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAAT 37181 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | || | ||| ||||| || ||||||||||| ||||| || Sbjct 37630 ACCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGA 37571 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| ||| | || || |||||||| || || || || | |||||| ||||| | || Sbjct 37570 TAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGG 37511 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| || || ||| ||| || || | | | ||||| ||||| Sbjct 37510 AATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAAC 37451 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| | ||||| |||||||| || | ||| || ||||| || ||||| Sbjct 37450 TTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 37403 >seq2593 Length=26768 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 8952 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 9011 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 9012 GCCGTTATTTAGCCTTA 9028 >seq34 Length=176868 Score = 102 bits (112), Expect = 5e-17 Identities = 146/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||||| |||| ||| || || |||| ||||| ||||| |||| |||| |||||||| Sbjct 50757 ATGAAATGTGCACTCTTTGTGGATATGATAATCTGACAAGGTACGTCCGTCTTCTAATTG 50816 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 | | || ||||| || |||||||||||||| | || | ||||||||||| |||| || Sbjct 50817 TATGCCAGCAAAAATAAGGCGTTGTTGATCAGGAGGAATTCCTTCTTTGTCATTAATCTT 50876 Query 38234 TTGCTTCACATTCTGGACAGTATCTC-CACTTTCAACTTCTAATGTAATAGTTTTACCCG 38292 || | || | | ||||| | | || || || ||||| || ||||| || | Sbjct 50877 ACTTTTAAGTTTGTCAATTGTATCACTCGAAGTC-ACCTCCAATGTTATTGTTTTTCCAG 50935 Query 38293 TCAAGGTTTTCACGAATATCTGC 38315 | | |||||||| ||||||||| Sbjct 50936 TTAGTGTTTTCACAAATATCTGC 50958 Score = 82.4 bits (90), Expect = 5e-11 Identities = 87/113 (77%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||||| |||| ||| ||||| |||| ||||| ||||| |||| |||| |||||||| Sbjct 46743 ATGAATTGTGCACTCTTTTTGGATATAATAATCTGACAAGGTACGTCCGTCTTCTAATTG 46802 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACG--CCTTCTTTGTC 38224 | || ||||| || || ||||||||||| |||| | | ||||||||||| Sbjct 46803 CGTGCCAGCAAAAATAAGACGTTGTTGATC--AGGGAAAGTTCCTTCTTTGTC 46853 >seq3635 Length=7973 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| ||||||||||||| ||||||||||||| |||||| | Sbjct 7012 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGAACTTGTTCGCTATTGGTCTCTC 6953 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 6952 GCCGTTATTTAGCCTTA 6936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334901198037539