Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1915 358 8e-94 seq2 190 3e-43 seq904 111 2e-19 >seq1915 Length=14346 Score = 358 bits (396), Expect = 8e-94 Identities = 680/991 (69%), Gaps = 20/991 (2%) Strand=Plus/Plus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGT---CCAGGACATTCATCCGGA-CACATCA 63047 ||| || || || |||||||||| ||| | |||||| |||| ||||| || || | Sbjct 10457 TTCAAATTCATCACCCCAAACAT---CCATTAAACCAGGAGCTTCAGCCGGATCAAATAA 10513 Query 63048 ACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63106 || | | | || | | |||| | | ||||||||| ||||| | || |||||| || Sbjct 10514 ACTCCAATTATCATT--TGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCA 10571 Query 63107 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63166 ||||| ||| | | | | ||| || ||||| ||||| ||||| | ||| | || Sbjct 10572 TAAAATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAA 10631 Query 63167 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63226 | | ||| |||| |||||||| ||| || || || || | | || || ||||||||| Sbjct 10632 TCAAAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTT 10691 Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| ||||| | ||||||||||| ||||||||||| | ||||| |||||||| ||| Sbjct 10692 CCTCCTTGATCAACATATCTAGCGGTATTATTATAAACGCGTAACATAGGAATAATTCCA 10751 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || || |||||| || || | ||||| ||| | |||||||| ||| ||| Sbjct 10752 TTTGAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTC 10811 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| || || ||||| | ||||| || | ||||||| ||| || ||||||||||| Sbjct 10812 ACACCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATT 10871 Query 63407 CCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63465 |||||||| |||||| |||| ||||| |||||||| || || | ||| | | | Sbjct 10872 CCCTCTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAGG 10930 Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 || || |||||||| || || ||||| ||||||||||| | ||||| || | ||||| Sbjct 10931 TGTGCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATT 10990 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||| || |||||||| | || ||||| | ||||| || || || || ||||| | Sbjct 10991 GTAAGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAG 11050 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||| || || || | ||| | | || |||| || | || ||| |||| | Sbjct 11051 CATATGTTGGGGACGCTCAGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAG 11110 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705 ||||||||| |||||||| || ||| | | |||| || ||||| || || || || Sbjct 11111 AGTTTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAAG 11170 Query 63706 TTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT----GAAATAATAGGAAAAT 63761 ||| ||| | ||||| | ||| || ||| || ||||| || | Sbjct 11171 TTTTTCC---GAATTGTTCATCACA-ATATTATAAGTTTTTTCAGAAATCATTGACGCGC 11226 Query 63762 GTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 63821 ||||||| |||| ||||| | ||| || | | ||| || | || | ||| | || Sbjct 11227 GTTTCCCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTT 11286 Query 63822 tttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCG 63881 |||| |||||||| || ||||| || || || || | ||| || || | |||||| |||| Sbjct 11287 TTTTAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCG 11346 Query 63882 GATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTG 63941 |||||| || || | || || |||| || |||| | | || ||||| || || Sbjct 11347 GATGTTTAGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGC 11406 Query 63942 TTACACCATTATATATTCCTTGGATAACCTT 63972 | ||||| | ||| | |||| || ||||| Sbjct 11407 TAACACCTTGATAAACTCCTGAAATGACCTT 11437 Score = 109 bits (120), Expect = 7e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 62732 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62791 ||||||||| |||||| | | |||| ||||| || || || |||| | || | Sbjct 10126 ACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGAA 10185 Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851 |||| | ||||| || || | ||||||||| ||||| || || | ||||||||||||| Sbjct 10186 TATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATTA 10245 Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 62911 || ||||| | ||| || || || || |||| ||||| ||||| ||||| ||| Sbjct 10246 GATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGAT 10305 Query 62912 TCTATAATCGCTTTCCAGAC 62931 || | ||| ||| ||||||| Sbjct 10306 TCAAGAATTGCTGTCCAGAC 10325 >seq2 Length=211661 Score = 190 bits (210), Expect = 3e-43 Identities = 323/458 (71%), Gaps = 10/458 (2%) Strand=Plus/Plus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 ||||||||| |||||| || || || |||||||| || ||||| |||||||||| Sbjct 204641 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 204700 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATA-AAtttttttAAATC 32475 ||| || ||||| ||||| || ||||| |||||| |||||| | | Sbjct 204701 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-- 204758 Query 32476 CCAATT--CAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCAT-TTCAC 32532 |||| | || ||| |||||||| || |||||||| |||||| ||||||| | ||| | Sbjct 204759 CCAAGTGCCACTAAT-AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGC 204817 Query 32533 AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA 32592 ||||| || || | |||||||| | || | || | |||||||||||| || | | Sbjct 204818 G-TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAA 204876 Query 32593 CCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAA-ATGTTTA 32651 |||| || | |||||||| | ||| |||| | ||| | | || || ||| | Sbjct 204877 CCGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCATGAAGATGAGTG 204935 Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 || | | |||||| ||||| || || | || || |||| | ||||| |||||||||| Sbjct 204936 AATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAA 204995 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || | ||| ||||| | || | || || | |||||| || ||||| || | |||| Sbjct 204996 AAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCA 205055 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAG 32809 |||||||| |||||||| || || ||||| || | ||| Sbjct 205056 GAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG 205093 Score = 179 bits (198), Expect = 5e-40 Identities = 218/294 (74%), Gaps = 5/294 (2%) Strand=Plus/Plus Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981 || || | ||| | ||||||||| || |||||||| ||||| || ||||| || Sbjct 205288 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 205347 Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 33041 || |||||||| || || ||||| || || | ||| || ||||| ||| ||| ||||| Sbjct 205348 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 205407 Query 33042 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33101 ||||||||||||| || || || || ||||||||| || ||||| || || ||| Sbjct 205408 ACTAAATTTTCATTGACAATACCATCCGAGGCTGCAAAGAAGGCCAAAACGTGAGAAATA 205467 Query 33102 AAATATTTTTCGTC-TGGTGTTAGTTTA---TTCCAATCATTGATATCTTTAGATATATC 33157 || ||||||| || | || | |||||| | ||||||||| ||||| || || | || Sbjct 205468 AAGAATTTTTCTTCATCGT-TAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTC 205526 Query 33158 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 ||||| || || ||||||||||| || || |||||||| ||||| | |||||| Sbjct 205527 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGAT 205580 >seq904 Length=34060 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 63416 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 63475 |||||||| |||| | | || ||| ||||| |||||||| | | || || ||| Sbjct 10804 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 10863 Query 63476 TTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 63535 ||||| || || ||| || |||||||| |||| || || | || ||| || || ||| Sbjct 10864 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 10923 Query 63536 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 63595 ||||||| || ||||| | ||||||||| | | |||||||| |||||||| || Sbjct 10924 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 10983 Query 63596 GGTCTTTCAAC 63606 ||||||||||| Sbjct 10984 GGTCTTTCAAC 10994 Score = 82.4 bits (90), Expect = 1e-10 Identities = 134/192 (70%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 62189 ACTACTTGAAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTATACGGT 62245 |||||||||||||| ||| ||||| ||| || |||||||| || || || ||| Sbjct 9114 ACTACTTGAAATTCCCCACTTAATACACGTCTTTGA---TAAATATTGCTTGTGTATGGT 9170 Query 62246 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62305 || | | ||||| ||||| | ||| ||| || |||||||| ||||| ||||| | | Sbjct 9171 TCAAAGCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATC 9230 Query 62306 AATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAA 62365 || ||| ||||| | || ||| ||||| || ||||| | | |||| | ||| Sbjct 9231 AACAAAGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCAT 9290 Query 62366 AGATCCGACGGT 62377 |||| || ||| Sbjct 9291 CGATCTGAAGGT 9302 Score = 82.4 bits (90), Expect = 1e-10 Identities = 191/286 (67%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 62600 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 62659 |||||||||||||| ||| ||||||||||||||| ||||||||||| ||| || Sbjct 9687 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 9746 Query 62660 ATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA- 62718 | |||||| | ||| | | || ||||| | | || | || || | |||||||| Sbjct 9747 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 9806 Query 62719 ----TCGCCCATCTATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCT 62773 ||| |||| ||||| | |||| || || || | ||||||||||||| Sbjct 9807 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 9866 Query 62774 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTT 62833 || |||| | | | ||||| | || ||||| || | |||| || | || || Sbjct 9867 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 9926 Query 62834 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 62879 || | ||| | ||||||| |||| || || | ||| |||||| Sbjct 9927 CCAAGATTCTTTTGATTAGATTTTTCATTGCAAGAATC--TATAAA 9970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633542745012400