Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1319 134 1e-26 seq157 123 2e-23 seq2177 122 8e-23 seq188 109 5e-19 seq942 107 2e-18 seq34 107 2e-18 seq97 96.9 3e-15 seq38 93.3 4e-14 seq364 84.2 2e-11 seq81 84.2 2e-11 >seq1319 Length=24104 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| | ||||||||| | || || | ||||| ||||| || Sbjct 16608 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 16667 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | | || || || | ||| ||||||||||| ||||| || || || Sbjct 16668 GATACCATTGACCAAGTTAAAGCGAAGATTCAA-GACAAAGAAGGCATTCCCCCGGATCA 16726 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || |||||||| |||||||| ||||||| || || || |||||||| Sbjct 16727 GCAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAA 16786 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| |||||||| || || || ||| | ||||| | ||||||| || Sbjct 16787 TATCCAAAAAGAGTCAACTCTCCATCTCGTGCTCCGTTTAAGAGGTGG 16834 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| | ||||| ||| | || || | ||||| || || ||| Sbjct 16836 ATGCAGATTTTTGTAAAGACCCTCACCGGGAAAACTATTACTCTTGAAGTTGAATCTTCT 16895 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | | ||| |||| | ||| ||||||||||| || || || || || Sbjct 16896 GATACAATTGAACAAGTCAAGACAAAGATTCA-AGACAAAGAAGGTATCCCTCCAGATCA 16954 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACA 25144 ||| | | |||||||| |||||||| Sbjct 16955 ACAAAGATTGATTTTTGCTGGCAAACA 16981 >seq157 Length=142614 Score = 123 bits (136), Expect = 2e-23 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || ||||| | || || ||| |||| || | ||||| ||||| | Sbjct 36491 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 36550 Query 25059 GACACTATCGAGTCA--CTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || ||| | ||||||| | ||| || || ||||| ||||| || || | Sbjct 36551 GATACCATTGA-TCAAGTTAAAGCAAAGATTCA-AGATAAGGAAGGAATTCCTCCAGATC 36608 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || || || || |||||||| ||||||| || ||| || ||||| | Sbjct 36609 AACAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTGTCAGATTATA 36668 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||||||||| || || ||| | || || | ||||||| || Sbjct 36669 ATATTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGG 36717 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | ||||||||| | || || | ||||| ||||| ||| Sbjct 37403 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 37462 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | | || ||||| | ||| || || ||||| ||||| || || || Sbjct 37463 GATACCATAGACCAAGTTAAAGCAAAGATTCAA-GATAAGGAAGGTATTCCTCCAGATCA 37521 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || || || || |||||||| ||||||| ||| ||| | ||||| || Sbjct 37522 GCAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAA 37581 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||||||| || || ||| | || || Sbjct 37582 TATTCAAAAAGAATCTACTCTCCATCTCGTACT 37614 Score = 113 bits (124), Expect = 4e-20 Identities = 162/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 25003 AAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACA 25062 |||| || || ||||| | ||||||||| | || || | ||||| ||||| ||||| | Sbjct 37179 AAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTGATA 37238 Query 25063 CTATCGAGTCAC--TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACA 25120 | || || ||| | ||||||| | ||| || || ||||| || || || || ||||| Sbjct 37239 CCATAGA-TCAAGTTAAAGCAAAGATTCAA-GATAAGGAAGGTATCCCCCCAGATCAACA 37296 Query 25121 GCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATAT 25180 || | || || ||||| |||||||| ||||||| || ||| | || || ||||| Sbjct 37297 ACGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAATAT 37356 Query 25181 TCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| ||||| || || ||| | || || | ||||||| || Sbjct 37357 TCAAAAGGAATCAACTCTCCATCTCGTACTTCGCTTAAGAGGTGG 37401 >seq2177 Length=17275 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| | || || ||| |||| || | ||||| ||||| || Sbjct 4201 ATGCAAATTTTTGTTAAAACTCTCACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 4260 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| | | || ||| ||| ||||||||||| ||||| || || || Sbjct 4261 GATACCATCGATCAAGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGATCAG 4320 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||| ||||| |||||| | || |||| || || | || |||||| Sbjct 4321 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 4380 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||| || || || ||||| ||||| Sbjct 4381 ATTCAAAAAGAGTCAACACTTCATTTGGTGCT 4412 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | ||||| || | ||||| | ||||| || || || Sbjct 3745 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 3804 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | | || ||||||| ||| ||||||||||| ||||| || ||||| Sbjct 3805 GACACTATTGACCAAGTTAAAGCAAAAATTCAA-GACAAAGAAGGAATTCCCCCAGACCA 3863 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || ||||||| || ||||||||| | ||||| | || || | ||||| || Sbjct 3864 GCAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGCCGTACCCTCTCAGATTATAA 3923 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||| || || || ||| |||| || Sbjct 3924 CATTCAAAAAGAGTCAACTCTTCATCTAGTACT 3956 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || |||||||| | ||||| ||| ||||||| | || || ||||| || Sbjct 3973 ATGCAAATCTTCGTAAAGACGCTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 4032 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | | || | |||| ||| || || || || || || || ||||| Sbjct 4033 GATACCATCGACCAAGTAAAAACCAAAATTCAA-GATAAGGAGGGTATCCCCCCAGACCA 4091 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | ||||| || || |||||| | || |||| || || | ||| ||||| Sbjct 4092 GCAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAA 4151 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||||||||| || ||| | || || Sbjct 4152 TATTCAAAAAGAATCCACTCTTCATCTCGTTCT 4184 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| || | || ||||| | || || | || || || || ||| Sbjct 4429 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 4488 Query 25059 GACACTATCGAGTCAC--TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || ||| | || | |||| ||| || ||||| || || || || || | Sbjct 4489 GATACCATTGA-TCAGGTTAAAACCAAAATTCAA-GATAAAGAGGGTATCCCTCCAGATC 4546 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | ||||| || || || ||||| ||||||| ||| ||| | ||||| | Sbjct 4547 AGCAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATA 4606 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 | || ||||||||||| || || || Sbjct 4607 ACATCCAAAAAGAATCAACTCTTCA 4631 >seq188 Length=104369 Score = 109 bits (120), Expect = 5e-19 Identities = 160/220 (73%), Gaps = 16/220 (7%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA--GTCGT 25056 |||||||| ||||| || || | || |||||| |||| || | ||||| || || | Sbjct 83063 ATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGTAGC 83122 Query 25057 CTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 || || ||||| |||| ||| ||||| ||| || |||||||| || || || Sbjct 83123 --GATACCATCGATAAAGTCA---AAGAAAAAATTCAA-GATAAAGAAGGAATCCCCCCG 83176 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG--CACTGTGGGCG 25170 || ||||| || | || ||||| || ||||| |||||||||| || |||| | || Sbjct 83177 GATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTTC--CG 83234 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||||||||||||| || |||| || || || Sbjct 83235 ATTACAATATTCAAAAAGAATCAACATTACACTTGGTACT 83274 >seq942 Length=78137 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070 || || || || || || ||| | || ||| | ||||| |||| ||| || || || Sbjct 25257 GTTAAAACATTAACTGGAAAAACTATAACAATTGAAGTCGAGTTTAGTGATACAATTGA- 25315 Query 25071 TCACTGAAGCA-AAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTAT 25129 ||| | || | |||||| ||||| |||||||| || ||||| || ||||| | | || Sbjct 25316 TCAATTAAAAACAAAAATTACTGAAAAAGAAGGTATACCACCAGATCAACAAAGATTAAT 25375 Query 25130 TTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGA 25189 |||||| || || ||| | ||||||| || ||| | | ||||||||||| | || Sbjct 25376 TTTTGCTGGTAAGCAACTTGAAGATGGCCGTACTTTAAGTGATTACAATATATGTGATGA 25435 Query 25190 ATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||||||||| |||| |||| || || Sbjct 25436 GTCCACGCTACATTTAGTATTAAGATTAAGGGGTGG 25471 >seq34 Length=176868 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25001 GCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGA 25060 ||| |||||||| || || | || || ||| | || ||| | || ||| ||| ||| Sbjct 50958 GCAGATATTTGTGAAAACACTAACTGGAAAAACAATAACATTGGAGGTGACTTCGAGTGA 50899 Query 25061 CACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACA 25120 || || || ||| || || || | |||||||||||| ||||| ||||| ||||| Sbjct 50898 TACAATTGACAAACTTAAAAGTAAGATTAATGACAAAGAAGGAATTCCTCCTGATCAACA 50839 Query 25121 GCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATAT 25180 || |||||||||| |||| |||||||||||| | || || || ||||| |||| Sbjct 50838 ACGCCTTATTTTTGCTGGCATACAATTAGAAGACGGACGTACCTTGTCAGATTATCATAT 50779 Query 25181 TCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || ||||| | ||| | ||| | | || || ||| | ||||||| Sbjct 50778 CCACAAAGAGTGCACATTTCATCTTATACTTAGACTACGTGGAGGAA 50732 >seq97 Length=146771 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||||| || | ||||| ||| | | || | || || ||||||||| Sbjct 24226 ATGCAGGTATTTGTAAAAACACTAACCGGAAAAACGGTAACCTTGGAGGTAGAGTCGTCT 24285 Query 25059 GACACTATCGAGTC-ACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||| || | | | || || ||| ||||| ||||| ||||| ||| | Sbjct 24286 GATACCATC-AGCCTAGTTAAATGCAAGATCCAAGACAAGGAAGGAATTCCTCCTAATAG 24344 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || |||||||||| || | ||||||||||||||| || || || | ||||| || Sbjct 24345 TCAACGTTTTATTTTTGCTGGAAGACAATTAGAAGATGAGCGTACCTTGAGTGATTATAA 24404 Query 25178 TATTCAAAAAGA 25189 ||| || ||||| Sbjct 24405 TATCCAGAAAGA 24416 >seq38 Length=163822 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 25097 AGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGA 25156 |||||| || || || || ||||| || | || | ||||| |||||| | |||||||| Sbjct 74513 AGAAGGTATACCTCCAGATCAACAACGTTTGCTTATGGCCGGTAAACAACTTGAAGATGA 74572 Query 25157 TCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||||||| | | ||||| ||||| ||| | ||||| || |||||||||| |||| | Sbjct 74573 TCGCACTTTAGAAGATTATAATATACAACATGAATCTACTGTACATTTAGTATTAAGATT 74632 Query 25217 AAGAGGAGG 25225 |||||| || Sbjct 74633 AAGAGGTGG 74641 >seq364 Length=140482 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 25095 AAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGAT 25154 |||||||| ||||| |||||||| || || ||||||||||| || || ||||| || ||| Sbjct 21074 AAAGAAGGCATTCCTCCTGACCAGCAACGTATTATTTTTGCTGGTAAGCAATTGGAGGAT 21015 Query 25155 GATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGG 25214 | ||| | ||||| |||||||||| ||| || ||| | ||| | || || || Sbjct 21014 GGAAAAACTTTATCAGATTATAATATTCAAAGAGAGTCTACGTTGCATCTTGTACTTAGA 20955 Query 25215 CTAAGAGGAGG 25225 ||| | || || Sbjct 20954 CTACGTGGTGG 20944 >seq81 Length=89240 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||| | ||||| || || | ||| ||| |||| || | || ||| | || | Sbjct 50092 ATGCAAGTTTTTGTGAAAACGCTATTCGGAAAAACCATAACGCTTGATGTGAAATCAAAT 50151 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 | ||||| | ||| | || ||||| ||| ||||||||||| ||||| ||||||| Sbjct 50152 AATACTATTGC-TCAGGTTAAACAAAAGATCGAAGACAAAGAAGGTATTCCTACTGACCA 50210 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || ||||||| ||| || | ||||||||| |||||| || || ||||| Sbjct 50211 GCAACGTATTATTTATGCTGGTACACAATTAGAGGATGATTACATCTTGTCAGATTATGG 50270 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| | || ||||| || | ||| | || || || ||| | || |||| Sbjct 50271 TATCTATAAGGAATCAACTTTGCATCTTGTACTTAGACTACGTGGCGGAA 50320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433268486326235