Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq188 183 3e-41 seq2177 159 3e-34 seq1319 143 2e-29 seq157 131 1e-25 seq1895 84.2 2e-11 seq34 82.4 6e-11 >seq188 Length=104369 Score = 183 bits (202), Expect = 3e-41 Identities = 182/236 (77%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 22210 TTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTG 22269 ||| |||| |||||||||||||||||||| | || |||||||| | ||| | ||||| Sbjct 83054 TTTTTAAACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTT 83113 Query 22270 GAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCA 22329 |||| | ||||||| | || | ||||| ||||||||||||| || || || || || Sbjct 83114 GAAAGTAGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCC 83173 Query 22330 CCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCC 22389 || |||||||||||| | |||||||| || ||||||||||| ||| || | | ||| Sbjct 83174 CCGGATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTTCC 83233 Query 22390 GATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| |||||||||||||| || |||| || || | || || ||||| || Sbjct 83234 GATTACAATATTCAAAAAGAATCAACATTACACTTGGTACTTCGTTTACGCGGTGG 83289 >seq2177 Length=17275 Score = 159 bits (176), Expect = 3e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || |||||||| | ||||| || || |||| |||||||| ||| | || Sbjct 3745 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 3804 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | ||| ||||||||||||||| || || ||||| || || || Sbjct 3805 GACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAG 3864 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| || || |||||||| | || || ||| ||| |||| ||||| ||| Sbjct 3865 CAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGCCGTACCCTCTCAGATTATAAC 3924 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || || | ||| |||| | ||| | ||||||||| Sbjct 3925 ATTCAAAAAGAGTCAACTCTTCATCTAGTACTTCGACTTCGCGGAGGT 3972 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||||||| | || || ||||| | ||| | ||||| || | || Sbjct 4201 ATGCAAATTTTTGTTAAAACTCTCACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 4260 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | ||| ||| || |||||||| || |||||||| || ||||| Sbjct 4261 GATACCATCGATCAAGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGATCAG 4320 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || ||||| ||||| | |||||| || ||| | || || ||||| Sbjct 4321 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 4380 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||||||||| || || | ||||| || Sbjct 4381 ATTCAAAAAGAGTCAACACTTCATTTGGT 4409 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| ||||| |||| | || || || || | Sbjct 3973 ATGCAAATCTTCGTAAAGACGCTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 4032 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | ||| ||||||||||| ||||||||||| || || || || Sbjct 4033 GATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 4092 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || ||||| | |||||| || ||| | ||||| ||||| Sbjct 4093 CAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAAT 4152 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||||||||| | ||| | ||| | || | || || ||| Sbjct 4153 ATTCAAAAAGAATCCACTCTTCATCTCGTTCTCCGTCTTCGTGGTGGT 4200 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| | || ||||| ||| | || ||||| || ||| | | Sbjct 4429 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 4488 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | ||| ||||||||||| || |||||||| || || ||||| Sbjct 4489 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAG 4548 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || || || || || || ||| || || | || ||||| ||| Sbjct 4549 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAAC 4608 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||||||||| || Sbjct 4609 ATCCAAAAAGAATCAAC 4625 >seq1319 Length=24104 Score = 143 bits (158), Expect = 2e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| ||| | ||||||||||| | ||||||||||| || || | Sbjct 16608 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 16667 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | ||| || ||||||||||| || || ||||| || ||||| Sbjct 16668 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 16727 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || |||||||| ||||| || || ||| || ||| | || |||||||| Sbjct 16728 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAAT 16787 Query 22399 ATTCAAAAAGAATCCAC 22415 || |||||||| || || Sbjct 16788 ATCCAAAAAGAGTCAAC 16804 Score = 100 bits (110), Expect = 2e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | ||||| ||||| | ||||||||||| ||| | | Sbjct 16836 ATGCAGATTTTTGTAAAGACCCTCACCGGGAAAACTATTACTCTTGAAGTTGAATCTTCT 16895 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| ||| ||||||||||| || ||||| || || |||||| Sbjct 16896 GATACAATTGAACAAGTCAAGACAAAGATTCAAGACAAAGAAGGTATCCCTCCAGATCAA 16955 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTA 22368 ||| | | || ||||| ||||||||| || Sbjct 16956 CAAAGATTGATTTTTGCTGGCAAACAGGTA 16985 >seq157 Length=142614 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | ||||||||||| | || |||||||| || || | Sbjct 37403 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 37462 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | ||| ||| |||||||| ||||| |||||||| || ||||| Sbjct 37463 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 37522 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || || || ||||| || || ||| || || | || ||||| || Sbjct 37523 CAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAAT 37582 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||||||||| || Sbjct 37583 ATTCAAAAAGAATCTAC 37599 Score = 123 bits (136), Expect = 2e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 22223 AAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATA 22282 ||||||| || || || | ||||||||||| | ||||||||||| || || | |||| Sbjct 37179 AAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTGATA 37238 Query 22283 CCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAAC 22342 || | || | | ||| ||| |||||||| ||||| ||||| || || |||||||||| Sbjct 37239 CCATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAACAAC 37298 Query 22343 GTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTC 22402 | | || || ||||| ||||| || || ||| ||| || | || || || || |||| Sbjct 37299 GCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAATATTC 37358 Query 22403 AAAAAGAATCCAC 22415 |||| ||||| || Sbjct 37359 AAAAGGAATCAAC 37371 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || ||||| | || |||||||| || ||| Sbjct 36491 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 36550 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | ||| ||| |||||||| ||||| || ||||| || |||||| Sbjct 36551 GATACCATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 36610 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || || || ||||| || || ||| ||| || | || ||||| || Sbjct 36611 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTGTCAGATTATAAT 36670 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||||||||| || Sbjct 36671 ATTCAAAAAGAATCAAC 36687 >seq1895 Length=14547 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 || |||||||||||||||||| ||| || ||||| | | ||||||| || || | Sbjct 4023 ATACAAATTTTTGTTAAAACTGTAAGTGGCAAAACAATTGCCATTGAAGTTGATGCCTCT 4082 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| || | || | ||| | | ||||||||| || || || | ||| || |||| Sbjct 4083 GATACAGTTAAAGAAGTGAAAAACATAATTCAAGATAAAGAAGGCACTCCTCCAAATCAG 4142 Query 22339 CAACGTCTTATATTTGCCGGCAAACA 22364 |||||| | || ||||| || ||||| Sbjct 4143 CAACGTTTGATCTTTGCTGGTAAACA 4168 >seq34 Length=176868 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 22221 GCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGA 22280 ||| || ||||| ||||| |||| || ||||| | || | || ||| | | || Sbjct 50958 GCAGATATTTGTGAAAACACTAACTGGAAAAACAATAACATTGGAGGTGACTTCGAGTGA 50899 Query 22281 TACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACA 22340 ||| | ||| | | ||| || ||| | ||||| || || ||||| || |||||||| Sbjct 50898 TACAATTGACAAACTTAAAAGTAAGATTAATGACAAAGAAGGAATTCCTCCTGATCAACA 50839 Query 22341 ACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACAT 22400 ||| ||||| ||||| |||| ||| ||||| || || ||| | || ||||| | || Sbjct 50838 ACGCCTTATTTTTGCTGGCATACAATTAGAAGACGGACGTACCTTGTCAGATTATCATAT 50779 Query 22401 TCAAAAAGAATCCAC 22415 || ||||| | ||| Sbjct 50778 CCACAAAGAGTGCAC 50764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419670354162985