Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2177 152 1e-31 seq157 132 1e-25 seq1319 118 3e-21 seq188 116 9e-21 seq34 116 9e-21 >seq2177 Length=17275 Score = 152 bits (168), Expect = 1e-31 Identities = 178/238 (75%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| |||| |||||| ||||||| || |||||||| || ||||| || | | Sbjct 3971 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAG 3912 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | |||||| || ||||| || ||||| || || |||||| Sbjct 3911 AGGGTACGGCCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGG---TCTGGG 3855 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||| || || ||||| ||||| || | || |||| ||| ||||| Sbjct 3854 GGAATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCA 3795 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTA-TGTTA 288480 ||||| || ||||| ||||| ||||| || || || ||||| || ||||| | ||||| Sbjct 3794 ACTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATGATTGTTA 3737 Score = 120 bits (132), Expect = 7e-22 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || ||||| |||| || |||||||||||| ||||| || Sbjct 4658 TGACCACCACGGAGACGGAGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCC 4599 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || || || ||||| ||||| || || ||||| |||| ||| || || |||| Sbjct 4598 GAAAGAGTACGACCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTG---ATCT 4542 Query 288364 ---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| || |||||||| || ||||| | ||| || | || || | ||| ||| Sbjct 4541 GGAGGGATACCCTCTTTATCTTGAATTTTGGTTTTAACCTGATCAATGGTATCAGATGAT 4482 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || |||||||| || || || || || || || || ||||| Sbjct 4481 TCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 4429 >seq157 Length=142614 Score = 132 bits (146), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||||||||| | || ||||||||| |||||||| || | | || || || ||| Sbjct 36702 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGGCCATCT 36643 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || |||||||| || |||||||| | || |||||| ||||| |||||||| ||| Sbjct 36642 TCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGA---TCTGGAGGAATTCCTTCCTTA 36586 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || || || ||||| || | || || | ||| | || || ||||| || || || Sbjct 36585 TCTTGAATCTTTGCTTTAACTTGATCAATGGTATCATTGGACTCGACTTCAAGGGTAATG 36526 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || |||||||||||||| ||||| Sbjct 36525 GTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 36491 Score = 132 bits (146), Expect = 1e-25 Identities = 170/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | |||||||||||| | || ||||||||| |||||||| || Sbjct 37632 TGACCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCC 37573 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | | || || || ||||| |||||||| || |||||||||| || || ||| ||| Sbjct 37572 GATAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGA---TCT 37516 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 || || ||||| ||||| || || || ||||| || | ||||| | ||| || Sbjct 37515 GGAGGAATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGAC 37456 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || || || || ||||| || ||||||||||| || ||||| Sbjct 37455 TCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 37403 Score = 127 bits (140), Expect = 5e-24 Identities = 155/210 (74%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 |||||||||||| | || ||| ||||| ||||||||||| | | || || || || Sbjct 37387 AAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATC 37328 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTT 288377 ||| |||||||| || |||||||||| || |||||| |||||| || ||||| || Sbjct 37327 TTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGA---TCTGGGGGGATACCTTCCTT 37271 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 ||| || || || ||||| || | ||||| | ||| || || ||||| || || || Sbjct 37270 ATCTTGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAAT 37211 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATAT 288467 || || ||||| || ||||||||||| || Sbjct 37210 TGTTTTACCGGTGAGGGTCTTGACGAAAAT 37181 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||||||||| |||||||| || || || | || |||| ||| ||||| |||||| Sbjct 36176 CCTTCTTTATCTTGGATTTTTGCCTTGACTTGGTCAATAGTATCTGAAGATTCAACTTCG 36117 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| |||||||| ||||| || ||||| Sbjct 36116 AGAGTAATGGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCAT 36073 >seq1319 Length=24104 Score = 118 bits (130), Expect = 3e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | || |||||||||||||| || || | | || ||||| ||| Sbjct 16819 AGCACGAGATGGAGAGTTGACTCTTTTTGGATATTGTAATCTGACAAGGTACGTCCATCT 16760 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || |||||||| || || ||||||| || || || ||| ||| || |||||||| Sbjct 16759 TCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTG---ATCCGGGGGAATGCCTTCTTTG 16703 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || || |||||||| || | || || | ||| || |||||||| || || || Sbjct 16702 TCTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATA 16643 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| |||||||| ||||| || ||||| Sbjct 16642 GTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 16608 >seq188 Length=104369 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| | | |||||| | || | || ||||||||| ||||| || |||| Sbjct 83289 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAA 83230 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || | ||||| |||||||| ||||| || || || || | ||| |||||| ||| Sbjct 83229 AGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGG 83170 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||||||||| || ||||| |||| || || || || | |||||| ||| ||| Sbjct 83169 ATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACT 83110 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || || || || || || || || || || || ||||| Sbjct 83109 TCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCAT 83063 >seq34 Length=176868 Score = 116 bits (128), Expect = 9e-21 Identities = 169/235 (72%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 288238 CATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTA 288297 || |||| ||| || || |||||||||| ||||||| |||| ||||| ||||||| | Sbjct 50726 CAAACAT-TCCTCCACGTAGTCTAAGTATAAGATGAAATGTGCACTCTTTGTGGATATGA 50784 Query 288298 TAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGA 288357 || || | | || |||||||||||||||||| | || || || || || || |||||| Sbjct 50785 TAATCTGACAAGGTACGTCCGTCTTCTAATTGTATGCCAGCAAAAATAAGGCGTTGTTGA 50844 Query 288358 GAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT-TCTATAGAATCGCT 288416 | || ||||||||||| || | || || |||| | |||| || || | ||| || Sbjct 50845 TCAGGAGGAATTCCTTCTTTGTCATTAATCTT-ACTTTTAAGTTTGTCAATTGTATCACT 50903 Query 288417 CGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGC 288471 ||| || || | || || || || || || || || || || ||||||||| Sbjct 50904 CGAAGTCACCTCCAATGTTATTGTTTTTCCAGTTAGTGTTTTCACAAATATCTGC 50958 Score = 104 bits (114), Expect = 6e-17 Identities = 112/146 (77%), Gaps = 7/146 (5%) Strand=Plus/Plus Query 288238 CATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTA 288297 || |||| ||| || || ||||||| ||| |||||||| |||| ||||||||||||| | Sbjct 46712 CAAACAT-TCCCCCACGTAGTCTAACTACAAGATGAATTGTGCACTCTTTTTGGATATAA 46770 Query 288298 TAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGA 288357 || || | | || ||||||||||||||||| | || || || || ||||| ||||| Sbjct 46771 TAATCTGACAAGGTACGTCCGTCTTCTAATTGCGTGCCAGCAAAAATAAGACGTTGTTG- 46829 Query 288358 GAATCTGGGA---TTCCTTCTTTATC 288380 ||| |||| |||||||||| || Sbjct 46830 --ATCAGGGAAAGTTCCTTCTTTGTC 46853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179484076705382