Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq328 87.8 2e-12 >seq328 Length=70815 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 172799 TTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACT 172858 |||||||| || ||||| || || || | ||||||||||| | ||||| || |||||| Sbjct 16849 TTCCCACGAAGCGGGAAAACTCCATAATTGTCACGACCAACTATAGAAAATCCGGCAACT 16908 Query 172859 GCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACA--CTTTCCAGATTGTG 172916 || | | ||| || ||||| || || || | ||| | ||||| ||| || || | Sbjct 16909 GCCAAAGCCTTTGCAGAATCGCCTTCAGTAAGGATTAAAGTACAATCTTGACATTTTTTA 16968 Query 172917 CCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATACCAGTAATTTTGGACTTG-CGG 172975 ||| || || || || ||||| |||| || | |||||| || ||| | || || | Sbjct 16969 CCG--CCGGCATTATTTGCATCATCCAGTTTAGCAATACCCGTGATTCT--ACCTGTCTT 17024 Query 172976 GC-ACCATCTGTCTTCTTGAGTTCCTT 173001 | |||||| || ||||| |||||||| Sbjct 17025 TCTACCATCGGTTTTCTTTAGTTCCTT 17051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597269455278520