Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2177 105 7e-18 seq188 87.8 2e-12 >seq2177 Length=17275 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || |||||||||||||| || | || || || | || || || || ||||||||||| Sbjct 4163 TCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAA 4104 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| || |||||||| | || | | |||||| | | ||| |||| |||| | | Sbjct 4103 ATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTAT-CTTGAATTTTGGTTTTTACTTG 4045 Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || || || || || || | |||||||||||||| || ||||||||||| Sbjct 4044 GTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTTGCCGGTGAGCGTCTTTAC 3985 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 3984 GAAGATTTGCAT 3973 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| |||||||| || ||||| | || || || |||| || || || || |||||||| Sbjct 3936 CTCTTTTTGAATGTTATAATCTGAGAGGGTACGGCCGTCTTCAAGTTGTTTGCCAGCGAA 3877 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || || |||||||| | || | | || ||||| ||| |||||| || | | | Sbjct 3876 AATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCT-TGAATTTTTGCTTTAACTT 3818 Query 42137 CGCCACC-GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | || |||||| ||||| || || | ||||| || || || || || || || | Sbjct 3817 GGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAA 3758 Query 42196 CAAAGATTTGCAT 42208 | ||||||||||| Sbjct 3757 CGAAGATTTGCAT 3745 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||||||| | ||| ||| |||||||||||||| |||| || || || | Sbjct 4416 ACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCC 4357 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || || || ||||| ||||| ||||| || ||||| || | || | | || || Sbjct 4356 ATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTT 4297 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| ||| ||| | | | || ||| || || || || | || || Sbjct 4296 GTCTTGGATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAAT 4237 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || || || || || ||||| |||||||| Sbjct 4236 GGTTTTTCCAGTGAGAGTTTTAACAAAAATTTGCAT 4201 >seq188 Length=104369 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/238 (68%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 41974 TTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 42033 |||| || || || | |||||| | ||||| || ||||| || ||||||||||||| Sbjct 83296 TTTACCG-CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGT 83238 Query 42034 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 42093 |||| | || | || | || |||| ||| |||||||| ||||| | || || || | Sbjct 83237 AATCGGAAAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGAT 83178 Query 42094 CGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCG 42153 | | || | | || || || ||||||| ||||| | | | || ||||| Sbjct 83177 CCGGGGGGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTAC 83118 Query 42154 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||| || || | || |||||||| || || || || || ||||| |||||||| || Sbjct 83117 TTTCAACTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTT 83060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543136281686960